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L3_133_000M1_scaffold_422

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_422_1
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(111..974)
DNA (864bp) protein (288aa)
PSP1 C-terminal domain protein n=2 Tax=Clostridium RepID=A7VYT3_9CLOT
PSP1 C-terminal domain protein {ECO:0000313|EMBL:EDO59711.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Uncharacterized homolog of PSP1
L3_133_000M1_scaffold_422_2
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1009..1890)
DNA (882bp) protein (294aa)
DNA polymerase III delta subunit n=1 Tax=Clostridium sp. CAG:413 RepID=R6NWW8_9CLOT
DNA polymerase III delta subunit {ECO:0000313|EMBL:CDC12904.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
DNA polymerase III subunit gamma and tau
L3_133_000M1_scaffold_422_3
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1905..2228)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NL50_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12903.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L3_133_000M1_scaffold_422_4
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2320..3627)
DNA (1308bp) protein (436aa)
Arginine decarboxylase (EC:4.1.1.19)
amino acid decarboxylase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035DFB79
Orn/Lys/Arg decarboxylase, major domain protein {ECO:0000313|EMBL:EJF42736.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_133_000M1_scaffold_422_5
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3657..4517)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6E1U8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA91229.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
hypothetical protein
L3_133_000M1_scaffold_422_6
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4553..5464)
DNA (912bp) protein (304aa)
Predicted permeases n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MJG2_9FIRM
Predicted permeases {ECO:0000313|EMBL:CCY91553.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Predicted permeases
L3_133_000M1_scaffold_422_7
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5556..6470)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I4T5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41494.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_133_000M1_scaffold_422_8
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6612..8033)
DNA (1422bp) protein (474aa)
Citrate synthase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HWU4_9FIRM
Citrate synthase {ECO:0000313|EMBL:CDB41495.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Citrate synthase
L3_133_000M1_scaffold_422_9
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8202..9176
DNA (975bp) protein (325aa)
Stage II sporulation protein D n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I7Y3_9FIRM
Stage II sporulation protein D {ECO:0000313|EMBL:CDB41496.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
stage II sporulation protein D
L3_133_000M1_scaffold_422_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9179..9751)
DNA (573bp) protein (191aa)
RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DHA8_CLODI
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:EQF26883.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
ECF subfamily RNA polymerase sigma-24 subunit
L3_133_000M1_scaffold_422_11
Paenibacillus sp. TCA20, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(9964..12075)
DNA (2112bp) protein (704aa)
cadA; cadmium/zinc/cobalt-transporting ATPase CadA (EC:3.6.3.3 3.6.3.5)
Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase n=1 Tax=Clostridium sp. CAG:352 RepID=R6QVP4_9CLOT
Cation-transporting ATPase P-type {ECO:0000313|EMBL:GAK40448.1}; TaxID=1499968 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. TCA20.;"
L3_133_000M1_scaffold_422_12
Sulfurospirillum barnesii, Sulfurospirillum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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comp(12072..12482)
DNA (411bp) protein (137aa)
Putative transcriptional regulator n=1 Tax=Sulfurospirillum barnesii (strain ATCC 700032 / DSM 10660 / SES-3) RepID=I3XW33_SULBS
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AFL68157.1}; TaxID=760154 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Sulfurospirillum.;" source="Sulfurospirillum barnesii (strain ATCC 700032 / DSM 10660 / SES-3).;"
L3_133_000M1_scaffold_422_13
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12997..13794
DNA (798bp) protein (266aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
proB; Glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NZB5_9CLOT
L3_133_000M1_scaffold_422_14
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13791..15035
DNA (1245bp) protein (415aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z861_9FIRM
L3_133_000M1_scaffold_422_15
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15076..15888
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MHJ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY91200.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
hypothetical protein
L3_133_000M1_scaffold_422_16
Natranaerobius thermophilus, Natranaerobius, Natranaerobiales, Clostridia, Firmicutes, Bacteria

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16169..17569
DNA (1401bp) protein (467aa)
Phospholipase D/Transphosphatidylase n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A8D0_NATTJ
phospholipase D/Transphosphatidylase
Phospholipase D/Transphosphatidylase {ECO:0000313|EMBL:ACB84496.1}; TaxID=457570 species="Bacteria; Firmicutes; Clostridia; Natranaerobiales; Natranaerobiaceae; Natranaerobius.;" source="Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 /; JW/NM-WN-LF).;"
L3_133_000M1_scaffold_422_17
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17723..18559)
DNA (837bp) protein (279aa)
nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC:2.4.2.19)
Nicotinate-nucleotide diphosphorylase (Carboxylating) n=2 Tax=Clostridium RepID=A7VYL5_9CLOT
Nicotinate-nucleotide diphosphorylase (Carboxylating) {ECO:0000313|EMBL:CDC03370.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
L3_133_000M1_scaffold_422_18
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18615..20084)
DNA (1470bp) protein (490aa)
L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase n=3 Tax=root RepID=R5MYZ4_9FIRM
L-aspartate oxidase {ECO:0000313|EMBL:CCY90222.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
L3_133_000M1_scaffold_422_19
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20115..21035)
DNA (921bp) protein (307aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Quinolinate synthetase complex, A subunit n=2 Tax=Clostridium RepID=A7VYL7_9CLOT
quinolinate synthetase complex, A subunit
L3_133_000M1_scaffold_422_20
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21328..22584
DNA (1257bp) protein (419aa)
GTPase HflX n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HXX8_9FIRM
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
GTP-binding protein HflX
L3_133_000M1_scaffold_422_21
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22655..23038
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KFQ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN34807.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
L3_133_000M1_scaffold_422_22
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23173..24681)
DNA (1509bp) protein (503aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HZV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42560.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
peptidase S1 and S6 chymotrypsin/Hap
L3_133_000M1_scaffold_422_23
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24802..26316)
DNA (1515bp) protein (505aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=3 Tax=root RepID=R5MID1_9FIRM
integral membrane sensor signal transduction histidine kinase
L3_133_000M1_scaffold_422_24
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26446..27135)
DNA (690bp) protein (230aa)
Response regulator receiver domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IX65_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDB42562.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
two component transcriptional regulator, winged helix family
L3_133_000M1_scaffold_422_25
unknown

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comp(27365..29122)
DNA (1758bp) protein (586aa)

This feature has no annotations

L3_133_000M1_scaffold_422_26
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29401..29886)
DNA (486bp) protein (162aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Clostridium sp. CAG:352 RepID=R6QWH4_9CLOT
L3_133_000M1_scaffold_422_27
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29910..31169)
DNA (1260bp) protein (420aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Clostridium sp. CAG:678 RepID=R5KM29_9CLOT
L3_133_000M1_scaffold_422_28
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31222..32811)
DNA (1590bp) protein (530aa)
putative AIPM/Hcit synthase family transferase aq_356 (EC:2.3.3.-)
2-isopropylmalate synthase/homocitrate synthase family protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HXG8_9FIRM
2-isopropylmalate synthase/homocitrate synthase family protein {ECO:0000313|EMBL:CDB42563.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_133_000M1_scaffold_422_29
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32908..33435)
DNA (528bp) protein (176aa)
Acetolactate synthase 3 regulatory subunit n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I7X4_9FIRM
Acetolactate synthase 3 regulatory subunit {ECO:0000313|EMBL:CDB42564.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
acetolactate synthase small subunit
L3_133_000M1_scaffold_422_30
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33474..35141)
DNA (1668bp) protein (556aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
ilvB; Acetolactate synthase large subunit (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Clostridium sp. CAG:217 RepID=R6J093_9CLOT
Displaying items 1-30 of 72 in total

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