ggKbase home page

L3_133_000M1_scaffold_458

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_458_1
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(275..1033)
DNA (759bp) protein (253aa)
CAAX amino terminal protease family protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DE58_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:CDD88203.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
CAAX amino terminal protease family.
L3_133_000M1_scaffold_458_2
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1102..1749)
DNA (648bp) protein (216aa)
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
HAD hydrolase, family IA, variant 1 n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZNG2_9FIRM
HAD hydrolase, family IA, variant 1 {ECO:0000313|EMBL:EDM88408.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L3_133_000M1_scaffold_458_3
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1802..2689)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DCS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD88205.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
hypothetical protein
L3_133_000M1_scaffold_458_4
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2649..3848)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DDA4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD88206.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
serine/threonine protein kinase
L3_133_000M1_scaffold_458_5
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4095..5861)
DNA (1767bp) protein (589aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=2 Tax=Clostridiales RepID=R7DFP2_9FIRM
L3_133_000M1_scaffold_458_6
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5879..6748)
DNA (870bp) protein (290aa)
EDD domain protein, DegV family n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZNG7_9FIRM
EDD domain protein, DegV family {ECO:0000313|EMBL:EDM88413.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
EDD domain protein, DegV family
L3_133_000M1_scaffold_458_7
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6908..8164)
DNA (1257bp) protein (419aa)
Efflux ABC transporter, permease protein n=2 Tax=Clostridiales RepID=A5ZNG9_9FIRM
Efflux ABC transporter permease protein {ECO:0000313|EMBL:CDD88209.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
ABC-type antimicrobial peptide transport system, permease component
L3_133_000M1_scaffold_458_8
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8179..10185)
DNA (2007bp) protein (669aa)
Conserved domain protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DCT3_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDD88210.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
hypothetical protein
L3_133_000M1_scaffold_458_9
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10189..10866)
DNA (678bp) protein (226aa)
ABC-type antimicrobial peptide transport system, ATPase component (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=2 Tax=Clostridiales RepID=A5ZNH1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDM88417.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L3_133_000M1_scaffold_458_10
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10863..12380)
DNA (1518bp) protein (506aa)
Efflux transporter RND family MFP subunit n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DFP7_9FIRM
Efflux transporter RND family MFP subunit {ECO:0000313|EMBL:CDD88212.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
Membrane-fusion protein
L3_133_000M1_scaffold_458_11
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12640..13800
DNA (1161bp) protein (387aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZNH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD88213.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
hypothetical protein
L3_133_000M1_scaffold_458_12
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13876..15678)
DNA (1803bp) protein (601aa)
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DCA6_9FIRM
Aspartate--tRNA ligase {ECO:0000313|EMBL:CDD88214.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
L3_133_000M1_scaffold_458_13
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15702..16952)
DNA (1251bp) protein (417aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DCU0_9FIRM
Histidine--tRNA ligase {ECO:0000313|EMBL:CDD88215.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
L3_133_000M1_scaffold_458_14
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16965..17546)
DNA (582bp) protein (194aa)
HD-GYP domain n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DDB5_9FIRM
HD-GYP domain {ECO:0000313|EMBL:CDD88216.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
HD-GYP domain
L3_133_000M1_scaffold_458_15
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17565..19094)
DNA (1530bp) protein (510aa)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase HemZ n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DFQ2_9FIRM
Coproporphyrinogen dehydrogenase HemZ {ECO:0000313|EMBL:CDD88217.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
L3_133_000M1_scaffold_458_16
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19087..19716)
DNA (630bp) protein (210aa)
Metallo-beta-lactamase domain protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZNH8_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EDM88424.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
Zn-dependent hydrolases, including glyoxylases
L3_133_000M1_scaffold_458_17
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19736..22066)
DNA (2331bp) protein (777aa)
(p)ppGpp synthetase, RelA/SpoT family (EC:2.7.6.5)
RelA/SpoT family protein n=2 Tax=Clostridiales RepID=A5ZNH9_9FIRM
RelA/SpoT family protein {ECO:0000313|EMBL:EDM88425.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L3_133_000M1_scaffold_458_18
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22123..22647)
DNA (525bp) protein (175aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=2 Tax=Clostridiales RepID=A5ZNI0_9FIRM
L3_133_000M1_scaffold_458_19
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22821..23843)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DDC2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD88221.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
hypothetical protein
L3_133_000M1_scaffold_458_20
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24290..25216
DNA (927bp) protein (309aa)
Transglutaminase-like protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DFQ8_9FIRM
Transglutaminase-like protein {ECO:0000313|EMBL:CDD88222.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
Transglutaminase-like enzymes, putative cysteine proteases
L3_133_000M1_scaffold_458_21
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25235..26278
DNA (1044bp) protein (348aa)
Bacterial type II secretion system domain protein F n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZNI4_9FIRM
Bacterial type II secretion system domain protein F {ECO:0000313|EMBL:EDM88430.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
Type II secretory pathway, component PulF
L3_133_000M1_scaffold_458_22
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26291..26653
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZNI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD88224.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
hypothetical protein
L3_133_000M1_scaffold_458_23
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26650..27147
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZNI6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM88432.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein
L3_133_000M1_scaffold_458_24
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27144..27599
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZNI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM88433.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein
L3_133_000M1_scaffold_458_25
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27596..28090
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DFT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD88227.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
hypothetical protein
L3_133_000M1_scaffold_458_26
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28083..29144
DNA (1062bp) protein (354aa)
Twitching motility protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DE96_9FIRM
Twitching motility protein {ECO:0000313|EMBL:CDD88228.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
pilus retraction protein PilT
L3_133_000M1_scaffold_458_27
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29492..31204)
DNA (1713bp) protein (571aa)
exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7D8B0_9FIRM
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:CDD86839.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
L3_133_000M1_scaffold_458_28
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31339..33747)
DNA (2409bp) protein (803aa)
Export membrane protein SecD n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DAG8_9FIRM
Export membrane protein SecD {ECO:0000313|EMBL:CDD86838.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
protein translocase subunit secF/protein translocase subunit secD
L3_133_000M1_scaffold_458_29
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33772..35136)
DNA (1365bp) protein (455aa)
Six-Cys-in-45 modification radical SAM protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZNJ3_9FIRM
Six-Cys-in-45 modification radical SAM protein {ECO:0000313|EMBL:EDM88439.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
Arylsulfatase regulator (Fe-S oxidoreductase)
L3_133_000M1_scaffold_458_30
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35225..35365)
DNA (141bp) protein (47aa)
RSAM-modified six-cysteine peptide n=4 Tax=Clostridiales RepID=A5ZNJ4_9FIRM
hypothetical protein
RSAM-modified six-cysteine peptide {ECO:0000313|EMBL:CDD86836.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
Displaying items 1-30 of 37 in total

View Taxonomy