ggKbase home page

L3_133_000M1_scaffold_498

Search features with annotation key words

Displaying items 1-30 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_498_1
Barnesiella viscericola, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3..188)
DNA (186bp) protein (62aa)
Uncharacterized protein n=2 Tax=Bacteroides uniformis RepID=I9U026_BACUN
helicase
Helicase {ECO:0000313|EMBL:AHF13067.1}; TaxID=880074 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella viscericola DSM 18177.;"
L3_133_000M1_scaffold_498_2
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(269..1210)
DNA (942bp) protein (314aa)
Uncharacterized protein n=4 Tax=root RepID=I9VE94_BACFG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDS33381.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
L3_133_000M1_scaffold_498_3
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1223..2053)
DNA (831bp) protein (277aa)
Uncharacterized protein n=2 Tax=Bacteroides fragilis RepID=I9B230_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EIY99147.1}; TaxID=997881 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL05T12C13.;"
hypothetical protein
L3_133_000M1_scaffold_498_4
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2319..4769)
DNA (2451bp) protein (817aa)
Alanine racemase n=1 Tax=Bacteroides sp. D20 RepID=D2EV05_9BACE
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase {ECO:0000313|EMBL:EOS06512.1}; TaxID=1235787 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis dnLKV2.;"
alanine racemase
L3_133_000M1_scaffold_498_5
Bacteroides sp. D20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4745..5641)
DNA (897bp) protein (299aa)
GSCFA family protein n=1 Tax=Bacteroides sp. D20 RepID=D2EV06_9BACE
GSCFA family protein {ECO:0000313|EMBL:EFA21783.1}; TaxID=585543 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D20.;"
GSCFA domain protein
L3_133_000M1_scaffold_498_6
Bacteroides sp. D20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5796..6161)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. D20 RepID=D2EV07_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EFA21784.1}; TaxID=585543 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D20.;"
L3_133_000M1_scaffold_498_7
Bacteroides sp. D20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6100..6894)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. D20 RepID=D2EV07_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EFA21784.1}; TaxID=585543 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D20.;"
L3_133_000M1_scaffold_498_8
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7238..9370
DNA (2133bp) protein (711aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00021618}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=997890 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis CL03T12C37.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Bacteroides uniformis RepID=I8ZGM1_BACUN
L3_133_000M1_scaffold_498_9
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9437..10777
DNA (1341bp) protein (447aa)
Uncharacterized protein n=2 Tax=Bacteroides uniformis RepID=I8ZC08_BACUN
Uncharacterized protein {ECO:0000313|EMBL:EIY73040.1}; TaxID=997890 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis CL03T12C37.;"
TrkA-N domain protein
L3_133_000M1_scaffold_498_10
Bacteroides uniformis CAG:3, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10799..12250
DNA (1452bp) protein (484aa)
TrkH family potassium uptake protein n=1 Tax=Bacteroides uniformis CAG:3 RepID=R7EJN7_9BACE
TrkH family potassium uptake protein {ECO:0000313|EMBL:CDE02636.1}; TaxID=1263055 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides uniformis CAG:3.;"
cation transporter
L3_133_000M1_scaffold_498_11
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12402..12725
DNA (324bp) protein (108aa)
Uncharacterized protein n=6 Tax=Bacteroides RepID=A7V7Q0_BACUN
Uncharacterized protein {ECO:0000313|EMBL:KDS64460.1}; TaxID=1339349 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis str. 3978 T3 ii.;"
hypothetical protein
L3_133_000M1_scaffold_498_12
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12837..13187
DNA (351bp) protein (117aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; TaxID=997890 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis CL03T12C37.;"
NADH dehydrogenase subunit A (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit A n=8 Tax=root RepID=A7V7Q1_BACUN
L3_133_000M1_scaffold_498_13
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13178..13759
DNA (582bp) protein (194aa)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=997890 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis CL03T12C37.;"
NADH dehydrogenase subunit B (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit B n=6 Tax=Bacteroides RepID=A7V7Q2_BACUN
L3_133_000M1_scaffold_498_14
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13775..15364
DNA (1590bp) protein (530aa)
NADH-quinone oxidoreductase subunit C/D {ECO:0000256|HAMAP-Rule:MF_01397}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01397};; NADH dehydrogenase I subunit C/D {ECO:0000256|HAMAP-Rule:MF_01397}; NDH-1 subunit C/D {ECO:0000256|HAMAP-Rule:MF_01397}; NUO3/NUO4 {ECO:0000256|HAMAP-Rule:MF_01397}; TaxID=1339349 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis str. 3978 T3 ii.;"
NADH dehydrogenase subunit D; NADH dehydrogenase subunit C (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit C/D n=1 Tax=Bacteroides uniformis dnLKV2 RepID=R9HRS2_BACUN
L3_133_000M1_scaffold_498_15
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15489..16574
DNA (1086bp) protein (362aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=1235787 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis dnLKV2.;"
NADH dehydrogenase subunit H (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit H n=4 Tax=root RepID=A7V7Q5_BACUN
L3_133_000M1_scaffold_498_16
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16632..17135
DNA (504bp) protein (168aa)
4Fe-4S binding domain protein n=2 Tax=Bacteroides RepID=A7V7Q6_BACUN
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDO52826.1}; TaxID=411479 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis ATCC 8492.;"
NADH dehydrogenase I, chain I
L3_133_000M1_scaffold_498_17
Bacteroides sp. D20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17166..17678
DNA (513bp) protein (171aa)
NADH dehydrogenase subunit J (EC:1.6.5.3)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 n=7 Tax=Bacteroides RepID=A7V7Q7_BACUN
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 {ECO:0000313|EMBL:EFA21793.1}; TaxID=585543 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D20.;"
L3_133_000M1_scaffold_498_18
Bacteroides sp. 4_1_36, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17684..17992
DNA (309bp) protein (103aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=457393 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_1_36.;"
NADH dehydrogenase subunit K (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit K n=7 Tax=Bacteroides RepID=A7V7Q8_BACUN
L3_133_000M1_scaffold_498_19
Bacteroides sp. D20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18051..19895
DNA (1845bp) protein (615aa)
NADH dehydrogenase subunit L (EC:1.6.5.3)
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Bacteroides sp. D20 RepID=D2EV18_9BACE
Proton-translocating NADH-quinone oxidoreductase, chain L {ECO:0000313|EMBL:EFA21795.1}; TaxID=585543 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D20.;"
L3_133_000M1_scaffold_498_20
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19947..21431
DNA (1485bp) protein (495aa)
NADH dehydrogenase subunit M (EC:1.6.5.3)
Proton-translocating NADH-quinone oxidoreductase, chain M n=5 Tax=Bacteroides RepID=A7V7R0_BACUN
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:EDO52830.1}; TaxID=411479 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis ATCC 8492.;"
L3_133_000M1_scaffold_498_21
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21553..22992
DNA (1440bp) protein (480aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=1235787 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis dnLKV2.;"
NADH dehydrogenase subunit N (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit N n=1 Tax=Bacteroides uniformis dnLKV2 RepID=R9HR66_BACUN
L3_133_000M1_scaffold_498_22
Bacteroides sp. 4_1_36, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23128..25911)
DNA (2784bp) protein (928aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=457393 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_1_36.;"
PAS domain S-box protein n=2 Tax=Bacteroides RepID=A7V7R2_BACUN
putative two-component system sensor histidine kinase
L3_133_000M1_scaffold_498_23
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26152..28617
DNA (2466bp) protein (822aa)
Uncharacterized protein n=1 Tax=Bacteroides uniformis dnLKV2 RepID=R9HZF0_BACUN
Uncharacterized protein {ECO:0000313|EMBL:EOS06530.1}; TaxID=1235787 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis dnLKV2.;"
putative TonB-dependent receptor protein
L3_133_000M1_scaffold_498_24
Bacteroides uniformis CAG:3, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28736..29917
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Bacteroides uniformis CAG:3 RepID=R7EM73_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDE02592.1}; TaxID=1263055 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides uniformis CAG:3.;"
hypothetical protein
L3_133_000M1_scaffold_498_25
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30038..30463)
DNA (426bp) protein (142aa)
Uncharacterized protein n=7 Tax=Bacteroides RepID=I9II49_BACUN
Bacterial DNA-binding family protein {ECO:0000313|EMBL:KDS63924.1}; TaxID=1339349 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis str. 3978 T3 ii.;"
hypothetical protein
L3_133_000M1_scaffold_498_26
Bacteroides sp. D20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30799..32076)
DNA (1278bp) protein (426aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=1 Tax=Bacteroides sp. D20 RepID=D2EV27_9BACE
Transporter, small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:EFA21804.1}; TaxID=585543 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D20.;"
MscS Mechanosensitive ion channel
L3_133_000M1_scaffold_498_27
Bacteroides uniformis CAG:3, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32104..33117)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Bacteroides uniformis CAG:3 RepID=R7EJW0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDE02588.1}; TaxID=1263055 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides uniformis CAG:3.;"
ABC transporter ATP-binding protein
L3_133_000M1_scaffold_498_28
Bacteroides uniformis CAG:3, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33129..33959)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Bacteroides uniformis CAG:3 RepID=R7EM68_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDE02587.1}; TaxID=1263055 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides uniformis CAG:3.;"
ABC transporter related protein
L3_133_000M1_scaffold_498_29
Bacteroides sp. D20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34075..34929
DNA (855bp) protein (285aa)
Putative membrane protein n=1 Tax=Bacteroides sp. D20 RepID=D2EV30_9BACE
Putative membrane protein {ECO:0000313|EMBL:EFA21807.1}; TaxID=585543 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D20.;"
Predicted permeases
L3_133_000M1_scaffold_498_30
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34946..35512)
DNA (567bp) protein (189aa)
Cyclic nucleotide-binding domain protein n=7 Tax=Bacteroides RepID=A7V7S5_BACUN
Uncharacterized protein {ECO:0000313|EMBL:EIY73513.1}; TaxID=997890 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis CL03T12C37.;"
transcriptional regulator, Crp/Fnr family
Displaying items 1-30 of 154 in total

View Taxonomy