ggKbase home page

L3_133_000M1_scaffold_644

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_644_1
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..267
DNA (267bp) protein (89aa)
Enolase {ECO:0000256|RuleBase:RU000654, ECO:0000313|EMBL:KIM02005.1}; EC=4.2.1.11 {ECO:0000256|RuleBase:RU000654, ECO:0000313|EMBL:KIM02005.1};; Flags: Fragment;; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
Enolase n=3 Tax=Bifidobacterium RepID=ENO_BIFAA
phosphopyruvate hydratase
L3_133_000M1_scaffold_644_2
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

350..898
DNA (549bp) protein (183aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=A1A144_BIFAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF39427.1}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
L3_133_000M1_scaffold_644_3
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

906..1472
DNA (567bp) protein (189aa)
Uncharacterized protein n=2 Tax=Bifidobacterium adolescentis RepID=A1A145_BIFAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDN84080.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
L3_133_000M1_scaffold_644_4
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1485..2480
DNA (996bp) protein (332aa)
Possible exopolyphosphatase-like protein n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A146_BIFAA
putative exopolyphosphatase-like protein
Exopolyphosphatase {ECO:0000313|EMBL:KIM02003.1}; Putative exopolyphosphatase-like protein {ECO:0000313|EMBL:AJE05683.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_5
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2820..3395
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A693_BIFAD
Cd efflux system component
Cd efflux system component {ECO:0000313|EMBL:AJE05684.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_6
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3429..4889
DNA (1461bp) protein (487aa)
L-serine ammonia-lyase {ECO:0000313|EMBL:EDN83080.1}; EC=4.3.1.17 {ECO:0000313|EMBL:EDN83080.1};; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
L-serine ammonia-lyase n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A692_BIFAD
sdaA; L-serine dehydratase
L3_133_000M1_scaffold_644_7
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4942..5349
DNA (408bp) protein (136aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
Peptidyl-prolyl cis-trans isomerase n=3 Tax=Bifidobacterium RepID=A1A149_BIFAA
peptidyl-prolyl cis-trans isomerase
L3_133_000M1_scaffold_644_8
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5388..5867
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=3 Tax=Bifidobacterium RepID=A1A150_BIFAA
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00003926}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
L3_133_000M1_scaffold_644_9
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5965..6852)
DNA (888bp) protein (296aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=A1A151_BIFAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDN83077.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
L3_133_000M1_scaffold_644_10
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6945..8471
DNA (1527bp) protein (509aa)
Histidine kinase-like protein n=3 Tax=Bifidobacterium RepID=A1A152_BIFAA
histidine kinase-like protein
Histidine kinase-like protein {ECO:0000313|EMBL:AJE05689.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_11
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8554..8832)
DNA (279bp) protein (93aa)
Transcriptional regulator WhiB n=6 Tax=Bifidobacterium RepID=A1A153_BIFAA
hypothetical protein
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L3_133_000M1_scaffold_644_12
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8936..10633)
DNA (1698bp) protein (566aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A154_BIFAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF39437.1}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
L3_133_000M1_scaffold_644_13
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10793..11755)
DNA (963bp) protein (321aa)
Cell envelope-like function transcriptional attenuator common domain protein n=2 Tax=Bifidobacterium RepID=A7A685_BIFAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE05692.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_14
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12211..13614)
DNA (1404bp) protein (468aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5H0P6_9BIFI
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AII76123.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_15
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13879..14178
DNA (300bp) protein (100aa)
Transcriptional regulator WhiB n=2 Tax=Bifidobacterium RepID=A7A682_BIFAD
WhiB-type transcription regulator
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_16
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14212..17316
DNA (3105bp) protein (1035aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A158_BIFAA
Uncharacterized protein {ECO:0000313|EMBL:BAF39441.1}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
hypothetical protein
L3_133_000M1_scaffold_644_17
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17313..18842
DNA (1530bp) protein (510aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5GM93_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII76126.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_18
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18846..19274)
DNA (429bp) protein (143aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=A1A160_BIFAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII76127.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_19
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19321..20157
DNA (837bp) protein (279aa)
Putative eukaryotic phosphomannomutase n=2 Tax=Bifidobacterium RepID=A7A678_BIFAD
Putative eukaryotic phosphomannomutase {ECO:0000313|EMBL:EDN83067.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
hypothetical protein
L3_133_000M1_scaffold_644_20
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20177..20884
DNA (708bp) protein (236aa)
Phosphoribosyl transferase domain protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A677_BIFAD
amidophosphoribosyltransferase
Amidophosphoribosyltransferase {ECO:0000313|EMBL:AII76129.1}; Phosphoribosyl transferase {ECO:0000313|EMBL:KIM02007.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_21
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20889..21965)
DNA (1077bp) protein (359aa)
Sensor protein n=3 Tax=root RepID=R5GS05_9BIFI
two-component sensor kinase
Membrane protein {ECO:0000313|EMBL:KIM01991.1}; Two-component sensor kinase {ECO:0000313|EMBL:AII76130.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_22
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21990..22712)
DNA (723bp) protein (241aa)
Response regulator of two-component system n=3 Tax=root RepID=A1A164_BIFAA
response regulator of two-component system
Response regulator of two-component system {ECO:0000313|EMBL:CCY18515.1}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
L3_133_000M1_scaffold_644_23
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22728..24983)
DNA (2256bp) protein (752aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
1,4-alpha-glucan branching enzyme GlgB n=2 Tax=Bifidobacterium RepID=A7A674_BIFAD
1,4-alpha-glucan branching enzyme
L3_133_000M1_scaffold_644_24
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25121..25717
DNA (597bp) protein (199aa)
Possible transcriptional regulator n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A166_BIFAA
transcriptional regulator
CarD family transcriptional regulator {ECO:0000313|EMBL:KIM01989.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_25
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25728..26204
DNA (477bp) protein (159aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=3 Tax=Bifidobacterium RepID=A1A167_BIFAA
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
L3_133_000M1_scaffold_644_26
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26213..27049)
DNA (837bp) protein (279aa)
ABC 3 transport family protein n=2 Tax=Bifidobacterium RepID=A7A671_BIFAD
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:AII76135.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_27
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27052..27915)
DNA (864bp) protein (288aa)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium RepID=A7A670_BIFAD
ATP binding protein of ABC transporter
ATP binding protein of ABC transporter {ECO:0000313|EMBL:AII76136.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_28
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28115..29182)
DNA (1068bp) protein (356aa)
ABC transporter, substrate-binding protein n=2 Tax=Bifidobacterium RepID=A7A669_BIFAD
putative solute binding protein of ABC transporter system
ABC transporter solute-binding protein {ECO:0000313|EMBL:AII76137.1}; Putative solute binding protein of ABC transporter system {ECO:0000313|EMBL:AJE05707.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_133_000M1_scaffold_644_29
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29328..30203
DNA (876bp) protein (292aa)
Bifunctional protein FolD n=2 Tax=Bifidobacterium RepID=A7A668_BIFAD
bifunctional methylenetetrahydrofolate dehydrogenase
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
L3_133_000M1_scaffold_644_30
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


30357..31781
DNA (1425bp) protein (475aa)
30S ribosomal protein S1 n=2 Tax=Bifidobacterium adolescentis RepID=A1A172_BIFAA
30S ribosomal protein S1
30S ribosomal protein S1 {ECO:0000313|EMBL:BAF39455.1}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
Displaying items 1-30 of 70 in total

View Taxonomy