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L3_133_000M1_scaffold_69

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Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_69_1
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(165..2411)
DNA (2247bp) protein (749aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZGR0_9ACTN
L3_133_000M1_scaffold_69_2
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(2562..2840)
DNA (279bp) protein (93aa)
30S ribosomal protein S15 n=2 Tax=Collinsella RepID=A4EC72_9ACTN
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
30S ribosomal protein S15P
L3_133_000M1_scaffold_69_3
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2979..3728)
DNA (750bp) protein (250aa)
DNA repair protein RecO n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EC71_9ACTN
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
DNA replication and repair protein RecO
L3_133_000M1_scaffold_69_4
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3744..4814)
DNA (1071bp) protein (357aa)
GTPase Era n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EC70_9ACTN
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
GTP-binding protein Era
L3_133_000M1_scaffold_69_5
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(4827..5204)
DNA (378bp) protein (126aa)
undecaprenol kinase (EC:2.7.1.66)
Prokaryotic diacylglycerol kinase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z7V5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73008.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L3_133_000M1_scaffold_69_6
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5214..5744)
DNA (531bp) protein (177aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Endoribonuclease YbeY n=2 Tax=Collinsella RepID=R5ZGR4_9ACTN
hypothetical protein
L3_133_000M1_scaffold_69_7
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5720..6724)
DNA (1005bp) protein (335aa)
PhoH family protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EC67_9ACTN
PhoH family protein {ECO:0000313|EMBL:EBA38767.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
PhoH; phosphate starvation-inducible protein PhoH
L3_133_000M1_scaffold_69_8
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6687..7979)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZAA0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73011.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
MiaB family RNA modification protein
L3_133_000M1_scaffold_69_9
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(7989..9137)
DNA (1149bp) protein (383aa)
Chaperone protein DnaJ n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZN30_9ACTN
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
heat shock protein DnaJ domain-containing protein
L3_133_000M1_scaffold_69_10
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9219..10322)
DNA (1104bp) protein (368aa)
DnaJ domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A3R2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73013.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
heat shock protein DnaJ domain-containing protein
L3_133_000M1_scaffold_69_11
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10381..11613)
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z7W0_9ACTN
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:KGI73014.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
oxygen-independent coproporphyrinogen III oxidase
L3_133_000M1_scaffold_69_12
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11616..12659)
DNA (1044bp) protein (348aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
tRNA-dihydrouridine synthase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EC62_9ACTN
tRNA-U20-dihydrouridine synthase
L3_133_000M1_scaffold_69_13
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12664..14535)
DNA (1872bp) protein (624aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Elongation factor 4 n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EC61_9ACTN
GTP-binding protein LepA
L3_133_000M1_scaffold_69_14
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(14572..14838)
DNA (267bp) protein (89aa)
30S ribosomal protein S20 n=2 Tax=Collinsella RepID=R5ZN34_9ACTN
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
SSU ribosomal protein S20P
L3_133_000M1_scaffold_69_15
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14972..15934)
DNA (963bp) protein (321aa)
DNA polymerase III subunit delta (EC:2.7.7.7)
DNA polymerase III, delta subunit n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EC59_9ACTN
DNA polymerase III, delta subunit {ECO:0000313|EMBL:KGI73018.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L3_133_000M1_scaffold_69_16
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16013..18316)
DNA (2304bp) protein (768aa)
Metallo-beta-lactamase domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z7W5_9ACTN
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CDA35778.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
DNA internalization-related competence protein ComEC/Rec2
L3_133_000M1_scaffold_69_17
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18313..19026)
DNA (714bp) protein (238aa)
ComEA protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EC57_9ACTN
ComEA protein {ECO:0000313|EMBL:EBA38757.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
competence protein ComEA
L3_133_000M1_scaffold_69_18
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19240..20484)
DNA (1245bp) protein (415aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Probable tRNA sulfurtransferase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EC56_9ACTN
thiamine biosynthesis/tRNA modification protein ThiI
L3_133_000M1_scaffold_69_19
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20485..20766)
DNA (282bp) protein (94aa)
DNA-directed RNA polymerase subunit omega n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZN40_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73022.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
DNA-directed RNA polymerase subunit omega
L3_133_000M1_scaffold_69_20
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20772..21341)
DNA (570bp) protein (190aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=2 Tax=Collinsella RepID=A4ECM0_9ACTN
L3_133_000M1_scaffold_69_21
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21342..21650)
DNA (309bp) protein (103aa)
Uncharacterized protein n=3 Tax=Collinsella RepID=A4ECL9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73024.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L3_133_000M1_scaffold_69_22
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21890..22606)
DNA (717bp) protein (239aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZGS7_9ACTN
L3_133_000M1_scaffold_69_23
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22600..23508)
DNA (909bp) protein (303aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
dihydroorotate oxidase B, catalytic subunit (EC:1.3.3.1)
Dihydroorotate dehydrogenase n=2 Tax=Collinsella RepID=R5ZAB4_9ACTN
L3_133_000M1_scaffold_69_24
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23523..24290)
DNA (768bp) protein (256aa)
dihydroorotate oxidase B, electron transfer subunit (EC:1.3.3.1)
Oxidoreductase NAD-binding domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZN44_9ACTN
Oxidoreductase NAD-binding domain protein {ECO:0000313|EMBL:EBA38747.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L3_133_000M1_scaffold_69_25
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(24407..25696)
DNA (1290bp) protein (430aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Collinsella sp. CAG:166 RepID=R6A3S6_9ACTN
L3_133_000M1_scaffold_69_26
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(25680..26624)
DNA (945bp) protein (315aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z7X6_9ACTN
L3_133_000M1_scaffold_69_27
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(26629..27213)
DNA (585bp) protein (195aa)
Uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR n=2 Tax=Collinsella RepID=A4ECL3_9ACTN
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L3_133_000M1_scaffold_69_28
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


27665..27853
DNA (189bp) protein (63aa)
50S ribosomal protein L28 n=2 Tax=Collinsella RepID=A4ECL2_9ACTN
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
LSU ribosomal protein L28P
L3_133_000M1_scaffold_69_29
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(28050..28826)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZN48_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35791.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
transposase
L3_133_000M1_scaffold_69_30
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

29171..31819
DNA (2649bp) protein (883aa)
alcohol dehydrogenase AdhE (EC:1.2.1.10 1.1.1.1)
Aldehyde dehydrogenase (NAD) family protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A3T1_9ACTN
Aldehyde-alcohol dehydrogenase {ECO:0000256|PIRNR:PIRNR000111}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Displaying items 1-30 of 89 in total

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