ggKbase home page

L3_133_123G1_scaffold_77

Search features with annotation key words

Displaying items 1-30 of 130 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_123G1_scaffold_77_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

431..2452
DNA (2022bp) protein (674aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BU66_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18001.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
LacI family transcriptional regulator
L3_133_123G1_scaffold_77_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2470..3753
DNA (1284bp) protein (428aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BTA8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43715.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC-type sugar transport system, periplasmic component
L3_133_123G1_scaffold_77_3
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3850..4734
DNA (885bp) protein (295aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BSD6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17999.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ABC transporter permease
L3_133_123G1_scaffold_77_4
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4731..5573
DNA (843bp) protein (281aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BS53_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43713.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
sugar ABC transporter permease
L3_133_123G1_scaffold_77_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5608..7026
DNA (1419bp) protein (473aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BT80_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43712.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
FAD dependent oxidoreductase
L3_133_123G1_scaffold_77_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7388..7561)
DNA (174bp) protein (58aa)
Xenobiotic-transporting ATPase (EC:3.6.3.44)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BU62_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17996.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_133_123G1_scaffold_77_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7724..7930)
DNA (207bp) protein (69aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BTA5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43710.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC transporter ATP-binding protein/permease
L3_133_123G1_scaffold_77_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8307..9503)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BSD1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17994.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Transposase and inactivated derivatives
L3_133_123G1_scaffold_77_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9505..11775
DNA (2271bp) protein (757aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BS49_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43708.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
glycoside hydrolase family protein
L3_133_123G1_scaffold_77_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11864..13066
DNA (1203bp) protein (401aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BT75_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43707.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted permease
L3_133_123G1_scaffold_77_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13165..15204
DNA (2040bp) protein (680aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BU57_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17991.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L3_133_123G1_scaffold_77_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15206..15652
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=4 Tax=Clostridiales RepID=A7B157_RUMGN
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
LSU ribosomal protein L9P
L3_133_123G1_scaffold_77_13
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15668..17011
DNA (1344bp) protein (448aa)
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=4 Tax=Clostridiales RepID=A7B158_RUMGN
Replicative DNA helicase {ECO:0000313|EMBL:EGN43704.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_133_123G1_scaffold_77_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17002..17652)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BS45_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17988.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Predicted transcriptional regulators
L3_133_123G1_scaffold_77_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17860..18030)
DNA (171bp) protein (57aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TN26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43702.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L3_133_123G1_scaffold_77_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18333..19493
DNA (1161bp) protein (387aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BU52_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17986.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_133_123G1_scaffold_77_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19508..20107
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B161_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77983.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Predicted metal-dependent phosphoesterases (PHP family)
L3_133_123G1_scaffold_77_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20204..20506
DNA (303bp) protein (101aa)
Transcriptional regulator, ArsR family n=2 Tax=Clostridiales RepID=A7B162_RUMGN
Transcriptional regulator ArsR family {ECO:0000313|EMBL:CCZ67166.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ArsR family transcriptional regulator
L3_133_123G1_scaffold_77_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20587..21600
DNA (1014bp) protein (338aa)
Putative permease n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B163_RUMGN
Putative permease {ECO:0000313|EMBL:EDN77985.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
permease
L3_133_123G1_scaffold_77_20
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21685..22107
DNA (423bp) protein (141aa)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TN31_9FIRM
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:CCZ67168.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
low molecular weight phosphotyrosine phosphatase family protein
L3_133_123G1_scaffold_77_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22371..23774)
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B166_RUMGN
Signal transduction histidine kinase
L3_133_123G1_scaffold_77_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23794..24495)
DNA (702bp) protein (234aa)
Response regulator receiver domain protein n=4 Tax=Clostridiales RepID=A7B167_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17983.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_133_123G1_scaffold_77_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24521..26896)
DNA (2376bp) protein (792aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Endonuclease MutS2 n=2 Tax=Lachnospiraceae RepID=F7JTL9_9FIRM
MutS2 family protein
L3_133_123G1_scaffold_77_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27024..28316
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BU49_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17981.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L3_133_123G1_scaffold_77_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28351..29292
DNA (942bp) protein (314aa)
CRISPR-associated endonuclease Cas3-HD {ECO:0000313|EMBL:EDN77992.1}; EC=3.1.-.- {ECO:0000313|EMBL:EDN77992.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
CRISPR-associated endonuclease Cas3-HD n=3 Tax=Lachnospiraceae RepID=A7B170_RUMGN
uncharacterized domain HDIG
L3_133_123G1_scaffold_77_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29367..30755
DNA (1389bp) protein (463aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Lachnospiraceae RepID=F7JTL6_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EGN43694.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_133_123G1_scaffold_77_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31069..31359
DNA (291bp) protein (97aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5U7P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43693.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_133_123G1_scaffold_77_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31343..32200
DNA (858bp) protein (286aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BT64_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43692.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
KilA-N domain-containing protein
L3_133_123G1_scaffold_77_29
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32336..32665)
DNA (330bp) protein (110aa)
Plasmid stabilization system protein, RelE/ParE family n=4 Tax=Clostridiales RepID=A7B179_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43691.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
toxin-antitoxin system, toxin component, RelE family protein
L3_133_123G1_scaffold_77_30
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32662..32967)
DNA (306bp) protein (102aa)
Addiction module antitoxin, RelB/DinJ family n=3 Tax=Lachnospiraceae RepID=A7B180_RUMGN
Addiction module antitoxin, RelB/DinJ family {ECO:0000313|EMBL:EDN78002.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
DNA-damage-inducible protein J
Displaying items 1-30 of 130 in total

View Taxonomy