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L3_133_123G1_scaffold_96

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Displaying items 1-30 of 116 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_123G1_scaffold_96_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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304..2556
DNA (2253bp) protein (751aa)
Formate C-acetyltransferase {ECO:0000313|EMBL:EDN77400.1}; EC=2.3.1.54 {ECO:0000313|EMBL:EDN77400.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
formate acetyltransferase 1 (EC:2.3.1.54)
Formate C-acetyltransferase n=3 Tax=Lachnospiraceae RepID=A7B374_RUMGN
L3_133_123G1_scaffold_96_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2634..3362
DNA (729bp) protein (243aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Pyruvate formate-lyase 1-activating enzyme n=4 Tax=Clostridiales RepID=A7B375_RUMGN
pyruvate formate-lyase activating enzyme
L3_133_123G1_scaffold_96_3
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3415..3576)
DNA (162bp) protein (54aa)
Rubredoxin n=4 Tax=Clostridiales RepID=A7B376_RUMGN
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
rubredoxin
L3_133_123G1_scaffold_96_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3879..5033
DNA (1155bp) protein (385aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8C107_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD21073.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_133_123G1_scaffold_96_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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5241..5729
DNA (489bp) protein (163aa)
Transcriptional regulator, MarR family n=4 Tax=Clostridiales RepID=A7B379_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43797.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
MarR-like transcriptional regulator
L3_133_123G1_scaffold_96_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5748..7982
DNA (2235bp) protein (745aa)
ABC transporter, ATP-binding protein n=3 Tax=Lachnospiraceae RepID=A7B380_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD21071.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ABC-type multidrug transport system, ATPase and permease components
L3_133_123G1_scaffold_96_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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7975..9798
DNA (1824bp) protein (608aa)
ABC transporter, ATP-binding protein n=3 Tax=Lachnospiraceae RepID=A7B381_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43795.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC-type multidrug transport system, ATPase and permease components
L3_133_123G1_scaffold_96_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9898..10401
DNA (504bp) protein (168aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBY0_9FIRM
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
GTP cyclohydrolase subunit MoaC
L3_133_123G1_scaffold_96_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10398..10898
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68662.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
molybdenum cofactor synthesis domain
L3_133_123G1_scaffold_96_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10871..11851
DNA (981bp) protein (327aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Cyclic pyranopterin monophosphate synthase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSB9_9FIRM
GTP cyclohydrolase subunit MoaA
L3_133_123G1_scaffold_96_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11858..12301
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TZ80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68664.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_133_123G1_scaffold_96_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12393..13349
DNA (957bp) protein (319aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSE9_9FIRM
L3_133_123G1_scaffold_96_13
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13366..14106
DNA (741bp) protein (247aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBY4_9FIRM
L3_133_123G1_scaffold_96_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14146..15303
DNA (1158bp) protein (386aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68667.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_133_123G1_scaffold_96_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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15351..16532
DNA (1182bp) protein (394aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
tRNA sulfurtransferase ThiI n=3 Tax=Lachnospiraceae RepID=V8C1V1_RUMGN
thiazole biosynthesis/tRNA modification protein ThiI
L3_133_123G1_scaffold_96_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16585..16818)
DNA (234bp) protein (78aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B391_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43786.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
PTS HPr component phosphorylation site.
L3_133_123G1_scaffold_96_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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16943..18235
DNA (1293bp) protein (431aa)
tRNA methylthiotransferase YqeV n=4 Tax=Clostridiales RepID=A7B392_RUMGN
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:EGN43785.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
MiaB-like tRNA modifying enzyme
L3_133_123G1_scaffold_96_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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18343..18606
DNA (264bp) protein (88aa)
UPF0297 protein RUMGNA_02021 n=4 Tax=Clostridiales RepID=A7B393_RUMGN
UPF0297 protein HMPREF1201_01065 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_133_123G1_scaffold_96_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18613..19059
DNA (447bp) protein (149aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
YqgF family RNAse H domain-containing protein n=4 Tax=Clostridiales RepID=V8C0Z3_RUMGN
conserved hypothetical protein TIGR00250
L3_133_123G1_scaffold_96_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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19085..19345
DNA (261bp) protein (87aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B395_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43782.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Protein of unknown function (DUF1292).
L3_133_123G1_scaffold_96_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19381..19863
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TZ89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68674.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Fe2+/Zn2+ uptake regulation proteins
L3_133_123G1_scaffold_96_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19887..21551
DNA (1665bp) protein (555aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B397_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD21055.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
putative hydrolase of the metallo-beta-lactamase superfamily protein
L3_133_123G1_scaffold_96_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21555..22208
DNA (654bp) protein (218aa)
O-methyltransferase n=4 Tax=Clostridiales RepID=A7B398_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43779.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted O-methyltransferase
L3_133_123G1_scaffold_96_24
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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22210..23442
DNA (1233bp) protein (411aa)
Collagenase and related proteases (EC:3.4.-.-)
Peptidase, U32 family n=3 Tax=Lachnospiraceae RepID=A7B399_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43778.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_133_123G1_scaffold_96_25
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23416..24042)
DNA (627bp) protein (209aa)
RNA polymerase sigma factor n=4 Tax=Clostridiales RepID=A7B3A0_RUMGN
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
L3_133_123G1_scaffold_96_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24317..25840
DNA (1524bp) protein (508aa)
Mg chelatase-like protein n=3 Tax=Lachnospiraceae RepID=A7B3A2_RUMGN
Mg chelatase-like protein {ECO:0000313|EMBL:ETD21051.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Mg chelatase-related protein
L3_133_123G1_scaffold_96_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25853..26935
DNA (1083bp) protein (361aa)
DNA protecting protein DprA n=4 Tax=Clostridiales RepID=A7B3A3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43775.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
DNA protecting protein DprA
L3_133_123G1_scaffold_96_28
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26970..29042
DNA (2073bp) protein (691aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=3 Tax=Lachnospiraceae RepID=A7B3A4_RUMGN
L3_133_123G1_scaffold_96_29
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29171..29950
DNA (780bp) protein (260aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=4 Tax=Clostridiales RepID=A7B3G5_RUMGN
GTP-sensing transcriptional pleiotropic repressor CodY {ECO:0000256|HAMAP-Rule:MF_00621, ECO:0000256|SAAS:SAAS00044533}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Pleiotropic transcriptional repressor
L3_133_123G1_scaffold_96_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30033..30359
DNA (327bp) protein (109aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B3G6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43771.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
Displaying items 1-30 of 116 in total

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