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L3_133_123G1_scaffold_303

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_123G1_scaffold_303_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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378..1028
DNA (651bp) protein (217aa)
TetR/AcrR family transcriptional regulator n=3 Tax=Clostridium RepID=E7GH73_CLOSY
TetR/AcrR family transcriptional regulator {ECO:0000313|EMBL:EGA95851.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Transcriptional regulator
L3_133_123G1_scaffold_303_2
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1125..2255
DNA (1131bp) protein (377aa)
Efflux transporter, RND family, MFP subunit n=3 Tax=Clostridium symbiosum RepID=U2DI31_CLOSY
Auxiliary transporter {ECO:0000313|EMBL:EGA95850.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
RND family efflux transporter, MFP subunit
L3_133_123G1_scaffold_303_3
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2268..5315
DNA (3048bp) protein (1016aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FE07_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF05376.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Cation/multidrug efflux pump
L3_133_123G1_scaffold_303_4
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5525..6685
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJS6_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05375.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L3_133_123G1_scaffold_303_5
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6710..7987
DNA (1278bp) protein (426aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=U2C5G1_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05374.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Outer membrane efflux protein.
L3_133_123G1_scaffold_303_6
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8060..8797)
DNA (738bp) protein (246aa)
Putative stage II sporulation protein R n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJS8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05373.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
stage II sporulation protein R
L3_133_123G1_scaffold_303_7
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8963..10030
DNA (1068bp) protein (356aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=3 Tax=Clostridium RepID=E9SJS9_CLOSY
L3_133_123G1_scaffold_303_8
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10136..10963
DNA (828bp) protein (276aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=4 Tax=Clostridium RepID=U2C444_CLOSY
L3_133_123G1_scaffold_303_9
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10965..11411
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FE01_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF05370.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L3_133_123G1_scaffold_303_10
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11759..12490
DNA (732bp) protein (244aa)
Transcription termination/antitermination factor NusG n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2C5F7_CLOSY
Transcription termination/antitermination factor NusG {ECO:0000313|EMBL:ERI79278.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
transcription antiterminator
L3_133_123G1_scaffold_303_11
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12613..13755
DNA (1143bp) protein (381aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FDZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF05368.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
L3_133_123G1_scaffold_303_12
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13810..14475
DNA (666bp) protein (222aa)
Bacterial sugar transferase n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BGI7_CLOSY
Bacterial sugar transferase {ECO:0000313|EMBL:ERI77209.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
UDP-galactose phosphate transferase
L3_133_123G1_scaffold_303_13
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14472..15650
DNA (1179bp) protein (393aa)
Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BZJ4_CLOSY
Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein {ECO:0000313|EMBL:ERI77208.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
diaminopimelate decarboxylase
L3_133_123G1_scaffold_303_14
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15610..16635
DNA (1026bp) protein (342aa)
ATP-grasp domain protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2D6Y5_CLOSY
ATP-grasp domain protein {ECO:0000313|EMBL:ERI77207.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
carbamoyl phosphate synthase-like protein
L3_133_123G1_scaffold_303_15
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16635..17843
DNA (1209bp) protein (403aa)
Glycosyltransferase, group 1 family protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2DCH8_CLOSY
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:ERI77206.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
group 1 glycosyl transferase
L3_133_123G1_scaffold_303_16
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17954..18856
DNA (903bp) protein (301aa)
LICD family protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BYB8_CLOSY
LICD protein family
LICD protein family {ECO:0000313|EMBL:AGC67182.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L3_133_123G1_scaffold_303_17
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18952..19674
DNA (723bp) protein (241aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BGI2_CLOSY
L3_133_123G1_scaffold_303_18
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19668..21026
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YBB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD59550.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
hypothetical protein
L3_133_123G1_scaffold_303_19
Coprobacillus sp. CAG:826, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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21030..21836
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Coriobacteriaceae RepID=UPI00037C3039
Uncharacterized protein {ECO:0000313|EMBL:CDD93706.1}; TaxID=1262857 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:826.;"
hypothetical protein
L3_133_123G1_scaffold_303_20
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21846..23414
DNA (1569bp) protein (523aa)
integral membrane protein MviN n=1 Tax=Clostridium sp. JC122 RepID=UPI00028895C6
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
integral membrane protein MviN
L3_133_123G1_scaffold_303_21
Streptococcus equinus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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23419..24492
DNA (1074bp) protein (358aa)
Nucleoside-diphosphate-sugar epimerases (EC:4.2.1.46)
Nucleoside-diphosphate-sugar epimerases n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6ITL4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KFN85829.1}; TaxID=1210006 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus equinus ATCC 33317.;"
L3_133_123G1_scaffold_303_22
unknown

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24489..24620
DNA (132bp) protein (44aa)

This feature has no annotations

L3_133_123G1_scaffold_303_23
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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24776..25816
DNA (1041bp) protein (347aa)
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=333849 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium DO.;"
GDP-mannose 4,6-dehydratase n=2 Tax=Enterococcus faecium RepID=Q3XZM9_ENTFC
L3_133_123G1_scaffold_303_24
Carnobacterium sp. WN1359, Carnobacterium, Lactobacillales, Bacilli, Firmicutes, Bacteria

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25853..26794
DNA (942bp) protein (314aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=1266845 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.;" source="Carnobacterium sp. WN1359.;"
GDP-L-fucose synthase n=1 Tax=Leptotrichia shahii RepID=UPI0003699848
GDP-L-fucose synthase
L3_133_123G1_scaffold_303_25
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26809..27978
DNA (1170bp) protein (390aa)
DegT/DnrJ/EryC1/StrS aminotransferase family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVQ4_9CLOT
DegT/DnrJ/EryC1/StrS aminotransferase family protein {ECO:0000313|EMBL:EEG56865.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
wbdK; putative pyridoxamine 5-phosphate-dependent dehydrase
L3_133_123G1_scaffold_303_26
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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28082..29398
DNA (1317bp) protein (439aa)
mannose-6-phosphate isomerase (EC:5.3.1.8)
Mannose-1-phosphate guanylyltransferase n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9MZU4_9FIRM
Mannose-1-phosphate guanylyltransferase {ECO:0000313|EMBL:EOS73332.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
L3_133_123G1_scaffold_303_27
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

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29367..30392
DNA (1026bp) protein (342aa)
mannose-6-phosphate isomerase, class I (EC:5.3.1.8)
Mannose-6-phosphate isomerase, class I n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9KQG8_9FIRM
Mannose-6-phosphate isomerase, class I {ECO:0000313|EMBL:EOS48665.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
L3_133_123G1_scaffold_303_28
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30452..32155
DNA (1704bp) protein (568aa)
Phosphomannomutase (EC:5.4.2.8)
Phosphomannomutase {ECO:0000313|EMBL:CBL18904.1}; EC=5.4.2.8 {ECO:0000313|EMBL:CBL18904.1};; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
Phosphomannomutase n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LGE3_9FIRM
L3_133_123G1_scaffold_303_29
unknown

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32395..32892
DNA (498bp) protein (166aa)

This feature has no annotations

L3_133_123G1_scaffold_303_30
unknown

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32902..33447
DNA (546bp) protein (182aa)

This feature has no annotations

Displaying items 1-30 of 45 in total

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