ggKbase home page

L3_133_242G1_scaffold_493

Search features with annotation key words

Displaying items 1-30 of 37 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_242G1_scaffold_493_1
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(104..1963)
DNA (1860bp) protein (620aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W565_9CLOT
TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:ENY98019.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
TRAP transporter, 4TM/12TM fusion protein
L3_133_242G1_scaffold_493_2
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1960..2967)
DNA (1008bp) protein (336aa)
TAXI family TRAP transporter solute receptor n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W4U2_9CLOT
TAXI family TRAP transporter solute receptor {ECO:0000313|EMBL:ENY98020.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
hypothetical protein
L3_133_242G1_scaffold_493_3
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3130..4299)
DNA (1170bp) protein (390aa)
Cystathionine beta-lyase (EC:4.4.1.8)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XQW3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY98021.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
L3_133_242G1_scaffold_493_4
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4331..5710)
DNA (1380bp) protein (460aa)
Anaerobic C4-dicarboxylate uptake C (DcuC) family transporter n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XE90_9CLOT
Anaerobic C4-dicarboxylate uptake C (DcuC) family transporter {ECO:0000313|EMBL:ENY98022.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
putative anaerobic C4-dicarboxylate transporter
L3_133_242G1_scaffold_493_5
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5875..6669
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XPW0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY98023.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
GntR family transcriptional regulator
L3_133_242G1_scaffold_493_6
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6816..7550)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000377AB10
Flagellar motor protein {ECO:0000313|EMBL:EXG86834.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
motB; motility protein B
L3_133_242G1_scaffold_493_7
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7562..8446)
DNA (885bp) protein (295aa)
Transporter, MotA/TolQ/ExbB proton channel family protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0WX58_9CLOT
Flagellar motor component {ECO:0000313|EMBL:EXG86835.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
MotA/TolQ/ExbB proton channel
L3_133_242G1_scaffold_493_8
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8587..10572)
DNA (1986bp) protein (662aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Transketolase n=1 Tax=Clostridium sp. CAG:7 RepID=R5INF1_9CLOT
transketolase
L3_133_242G1_scaffold_493_9
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10800..12149)
DNA (1350bp) protein (450aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HTI9_9CLOT
L3_133_242G1_scaffold_493_10
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12276..13046)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EMA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ59076.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L3_133_242G1_scaffold_493_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13340..14035)
DNA (696bp) protein (232aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
methylthioadenosine nucleosidase (EC:3.2.2.9 3.2.2.16)
MTA/SAH nucleosidase n=1 Tax=Clostridium sp. CAG:7 RepID=R5ITE1_9CLOT
L3_133_242G1_scaffold_493_12
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14261..14509
DNA (249bp) protein (83aa)
Putative uncharacterized protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R0P8_CLOSW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL02697.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L3_133_242G1_scaffold_493_13
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14623..17622
DNA (3000bp) protein (1000aa)
Uncharacterized protein n=3 Tax=Clostridium bolteae RepID=A8RL14_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ34996.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
Predicted Zn-dependent peptidases, insulinase-like
L3_133_242G1_scaffold_493_14
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18052..18372
DNA (321bp) protein (107aa)
Uncharacterized protein n=17 Tax=Clostridium RepID=A8RL52_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP18154.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
PadR family transcriptional regulator
L3_133_242G1_scaffold_493_15
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18369..19154
DNA (786bp) protein (262aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HIN5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJJ65938.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
hypothetical protein
L3_133_242G1_scaffold_493_16
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

19423..19620
DNA (198bp) protein (66aa)
Putative stress-responsive transcriptional regulator n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6WC22_9FIRM
Putative stress-responsive transcriptional regulator {ECO:0000313|EMBL:CDC91767.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
phage shock protein C, PspC
L3_133_242G1_scaffold_493_17
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19736..22048)
DNA (2313bp) protein (771aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ribonucleoside-diphosphate reductase, alpha subunit (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQ48_9FIRM
L3_133_242G1_scaffold_493_18
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22131..23174)
DNA (1044bp) protein (348aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Ribonucleotide reductase, beta subunit (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQ49_9FIRM
L3_133_242G1_scaffold_493_19
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23335..24210
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HIP8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJJ75075.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
hypothetical protein
L3_133_242G1_scaffold_493_20
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24236..26485)
DNA (2250bp) protein (750aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Clostridium sp. CAG:149 RepID=R5MKK0_9CLOT
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EFE14668.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
diguanylate cyclase (GGDEF) domain
L3_133_242G1_scaffold_493_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26734..27408
DNA (675bp) protein (225aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FL25_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:EEA83280.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_133_242G1_scaffold_493_22
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27405..28622
DNA (1218bp) protein (406aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1PTU7_9FIRM
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L3_133_242G1_scaffold_493_23
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

28715..29323
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5H9C3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY26310.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
hypothetical protein
L3_133_242G1_scaffold_493_24
Lachnospiraceae bacterium JC7, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29428..30990
DNA (1563bp) protein (521aa)
Putative uncharacterized protein n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N2X9_SLAHD
Uncharacterized protein {ECO:0000313|EMBL:ETP72278.1}; Flags: Precursor;; TaxID=1165092 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium JC7.;"
hypothetical protein
L3_133_242G1_scaffold_493_25
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31036..31818)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. NC2007 RepID=UPI0003B69A4B
hypothetical protein
UPF0246 protein CK3_07360 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_133_242G1_scaffold_493_26
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31850..33133)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5F568_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY00185.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
TRAP dicarboxylate transporter subunit DctM
L3_133_242G1_scaffold_493_27
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33135..33728)
DNA (594bp) protein (198aa)
Uncharacterized protein n=10 Tax=Clostridium RepID=N9VZ75_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ13633.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
tripartite ATP-independent periplasmic transporter DctQ
L3_133_242G1_scaffold_493_28
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33740..34765)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5F5P9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY00183.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
TRAP dicarboxylate transporter subunit DctP
L3_133_242G1_scaffold_493_29
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35978..37369)
DNA (1392bp) protein (464aa)
Site-specific recombinase/integrase n=1 Tax=Clostridium clostridioforme 90A4 RepID=R0CE46_9CLOT
Site-specific recombinase XerD
Uncharacterized protein {ECO:0000313|EMBL:EHE98796.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
L3_133_242G1_scaffold_493_30
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37347..37784)
DNA (438bp) protein (146aa)
Uncharacterized protein n=12 Tax=Firmicutes RepID=A8RVX7_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHF03420.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Displaying items 1-30 of 37 in total

View Taxonomy