ggKbase home page

LAC_acetylene_scaffold_4045

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
LAC_acetylene_scaffold_4045_1
unknown

Not on your lists

comp(3..1418)
DNA (1416bp) protein (472aa)

This feature has no annotations

LAC_acetylene_scaffold_4045_2
Treponema azotonutricium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

1454..2131
DNA (678bp) protein (226aa)
tmk; dTMP kinase (EC:2.7.4.9)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=545695 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9).;"
Thymidylate kinase n=1 Tax=Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) RepID=F5YBM1_TREAZ
LAC_acetylene_scaffold_4045_3
Treponema maltophilum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(2100..3230)
DNA (1131bp) protein (377aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1125699 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema maltophilum ATCC 51939.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Treponema maltophilum ATCC 51939 RepID=S3K1T8_TREMA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
LAC_acetylene_scaffold_4045_4
Treponema caldarium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(3217..4254)
DNA (1038bp) protein (346aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; Flags: Precursor;; TaxID=744872 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1) (Spirochaeta; caldaria).;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F2U4_SPICH
Holliday junction ATP-dependent DNA helicase ruvB
LAC_acetylene_scaffold_4045_5
Treponema pedis, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(4251..4859)
DNA (609bp) protein (203aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031};; TaxID=1291379 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema pedis str. T A4.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Treponema pedis str. T A4 RepID=S6A2R1_9SPIO
ruvA; Holliday junction DNA helicase RuvA
LAC_acetylene_scaffold_4045_6
Treponema primitia, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(4861..5367)
DNA (507bp) protein (169aa)
Holliday junction resolvase RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=545694 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2).;"
Holliday junction resolvase n=1 Tax=Treponema primitia RepID=UPI0002555708
LAC_acetylene_scaffold_4045_7
Treponema caldarium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(5376..6206)
DNA (831bp) protein (277aa)
Probable transcriptional regulatory protein Spica_1339 n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F2U1_SPICH
hypothetical protein
Probable transcriptional regulatory protein Spica_1339 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=744872 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1) (Spirochaeta; caldaria).;"
LAC_acetylene_scaffold_4045_8
Treponema caldarium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(6185..8668)
DNA (2484bp) protein (828aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=744872 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1) (Spirochaeta; caldaria).;"
Endonuclease MutS2 n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F0G6_SPICH
MutS2 protein
LAC_acetylene_scaffold_4045_9
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

Not on your lists

comp(8668..9651)
DNA (984bp) protein (328aa)
ribosome small subunit-dependent GTPase A id=3200171 bin=GWA1_Treponema_62_8 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA1_Treponema_62_8 organism_group=Spirochaetes
yjeQ; GTPase YjeQ
Tax=GWC1_Treponema_61_84_curated
LAC_acetylene_scaffold_4045_10
Spirochaeta thermophila, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(9675..10457)
DNA (783bp) protein (261aa)
glutamate racemase (EC:5.1.1.3)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=665571 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1).;"
Glutamate racemase n=1 Tax=Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1) RepID=E0RNP9_SPITD
LAC_acetylene_scaffold_4045_11
unknown

Not on your lists

10464..10787
DNA (324bp) protein (108aa)

This feature has no annotations

LAC_acetylene_scaffold_4045_12
Treponema caldarium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

10990..11490
DNA (501bp) protein (167aa)
Pentapeptide repeat protein n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F0G2_SPICH
pentapeptide repeat-containing protein
Pentapeptide repeat protein {ECO:0000313|EMBL:AEJ19306.1}; TaxID=744872 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1) (Spirochaeta; caldaria).;"
LAC_acetylene_scaffold_4045_13
Treponema lecithinolyticum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

11487..12095
DNA (609bp) protein (203aa)
Metallo-beta-lactamase domain protein n=1 Tax=Treponema lecithinolyticum ATCC 700332 RepID=U2M142_TRELE
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:ERJ93033.1}; TaxID=1321815 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema lecithinolyticum ATCC 700332.;"
beta-lactamase domain-containing protein
LAC_acetylene_scaffold_4045_14
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(12100..13368)
DNA (1269bp) protein (423aa)
L-fucose isomerase 2 domain protein id=4914429 bin=GWC2_Ignavibacteria_38_9 species=Halanaerobium praevalens genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
L-fucose isomerase-like protein
Tax=BJP_08E140C01_Coriobacteriales_62_12
LAC_acetylene_scaffold_4045_15
Spirochaeta thermophila, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(13389..14639)
DNA (1251bp) protein (417aa)
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Probable oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:ADN02079.1}; EC=1.3.99.22 {ECO:0000313|EMBL:ADN02079.1};; TaxID=665571 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1).;"
Probable oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1) RepID=E0RSU2_SPITD
LAC_acetylene_scaffold_4045_16
unknown

Not on your lists

comp(14636..15274)
DNA (639bp) protein (213aa)

This feature has no annotations

LAC_acetylene_scaffold_4045_17
GWB1_Spirochaetes_48_6_curated, Spirochaetes, Bacteria

Not on your lists

comp(15225..16199)
DNA (975bp) protein (325aa)
signal peptidase I
Signal peptidase I id=2780865 bin=GWA1_Treponema_62_8 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA1_Treponema_62_8 organism_group=Spirochaetes
Tax=GWB1_Spirochaetes_48_6_curated
LAC_acetylene_scaffold_4045_18
GWB1_Spirochaetes_48_6_curated, Spirochaetes, Bacteria

Not on your lists

16269..17822
DNA (1554bp) protein (518aa)
Putative uncharacterized protein n=1 Tax=Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2) RepID=F5YH16_TREPZ
hypothetical protein
Tax=GWB1_Spirochaetes_48_6_curated
LAC_acetylene_scaffold_4045_19
Treponema medium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

17819..18286
DNA (468bp) protein (156aa)
SsrA-binding protein n=1 Tax=Treponema medium ATCC 700293 RepID=S3KBJ5_TREMD
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1125700 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema medium ATCC 700293.;"
SsrA-binding protein
LAC_acetylene_scaffold_4045_20
Treponema denticola, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

18293..18835
DNA (543bp) protein (181aa)
RsmD family RNA methyltransferase n=7 Tax=Treponema denticola RepID=M2CMQ6_TREDN
methyltransferase
RsmD family RNA methyltransferase {ECO:0000313|EMBL:EMB34848.1}; TaxID=999432 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema denticola H-22.;"
LAC_acetylene_scaffold_4045_21
unknown

Not on your lists

comp(18814..18987)
DNA (174bp) protein (58aa)

This feature has no annotations

LAC_acetylene_scaffold_4045_22
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

18995..20131
DNA (1137bp) protein (379aa)
Tetratricopeptide TPR_2 repeat-containing protein id=1275987 bin=GWE1_Spirochaete_60_18 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
hypothetical protein
Tax=GWB1_Spirochaetes_60_80_curated
LAC_acetylene_scaffold_4045_23
GWB1_Spirochaetes_48_6_curated, Spirochaetes, Bacteria

Not on your lists

20128..21195
DNA (1068bp) protein (356aa)
Radical SAM enzyme, Cfr family n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8EXJ9_SPICH
radical SAM enzyme, Cfr family
Tax=GWB1_Spirochaetes_48_6_curated
LAC_acetylene_scaffold_4045_24
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(21240..22490)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F1R2_SPICH
hypothetical protein
Tax=RBG_16_Spirochaete_67_19_curated
LAC_acetylene_scaffold_4045_25
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(22522..24846)
DNA (2325bp) protein (775aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F1R1_SPICH
DEAD/DEAH box helicase domain-containing protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
LAC_acetylene_scaffold_4045_26
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

24910..26184
DNA (1275bp) protein (425aa)
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase id=1275983 bin=GWE1_Spirochaete_60_18 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
LAC_acetylene_scaffold_4045_27
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

comp(26205..26789)
DNA (585bp) protein (195aa)
Phosphoribosyl transferase domain protein id=1275981 bin=GWE1_Spirochaete_60_18 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
phosphoribosyl transferase domain-containing protein
Tax=GWB1_Spirochaetes_60_80_curated
LAC_acetylene_scaffold_4045_28
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(26898..28418)
DNA (1521bp) protein (507aa)
protease Do (EC:3.4.21.108)
Protease Do id=2537968 bin=GWB1_Spirochaetales_60_80 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
LAC_acetylene_scaffold_4045_29
GWB1_Spirochaetes_48_6_curated, Spirochaetes, Bacteria

Not on your lists

comp(28534..29280)
DNA (747bp) protein (249aa)
Methionine aminopeptidase id=1275979 bin=GWE1_Spirochaete_60_18 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
methionine aminopeptidase
Tax=GWB1_Spirochaetes_48_6_curated
LAC_acetylene_scaffold_4045_30
GWB1_Spirochaetes_48_6_curated, Spirochaetes, Bacteria

Not on your lists

comp(29261..29704)
DNA (444bp) protein (148aa)
N utilization substance protein B homolog id=2537973 bin=GWB1_Spirochaetales_60_80 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes
NusB antitermination factor
Tax=GWB1_Spirochaetes_48_6_curated
Displaying items 1-30 of 73 in total

View Taxonomy