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anamox3_curated_scaffold_2790

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox3_curated_scaffold_2790_1
unknown

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comp(3..326)
DNA (324bp) protein (108aa)

This feature has no annotations

anamox3_curated_scaffold_2790_2
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(397..963)
DNA (567bp) protein (189aa)
RNA polymerase sigma-70 factor Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XVE1_PEDHD
RNA polymerase sigma-70 factor
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ACU04007.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
anamox3_curated_scaffold_2790_3
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1082..1855)
DNA (774bp) protein (258aa)
Glucosamine-6-phosphate deaminase {ECO:0000313|EMBL:AEI48315.1}; EC=3.5.99.6 {ECO:0000313|EMBL:AEI48315.1};; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003696400
glucosamine-6-phosphate deaminase
anamox3_curated_scaffold_2790_4
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1889..3043)
DNA (1155bp) protein (385aa)
Glucosamine-6-phosphate deaminase {ECO:0000313|EMBL:EPR67914.1}; EC=3.5.99.6 {ECO:0000313|EMBL:EPR67914.1};; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
Glucosamine-6-phosphate deaminase Tax=Cyclobacterium qasimii M12-11B RepID=S7WME8_9BACT
glucosamine/galactosamine-6-phosphate isomerase
anamox3_curated_scaffold_2790_5
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(3078..4547)
DNA (1470bp) protein (490aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00037DE55E
Putative sodium-coupled permease {ECO:0000313|EMBL:EPR65492.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
Na+/solute symporter
anamox3_curated_scaffold_2790_6
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(4574..5791)
DNA (1218bp) protein (406aa)
Uncharacterized protein bin=GWA2_Bacteroidetes_42_15 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
hypothetical protein
Tax=GWE2_Bacteroidetes_42_39_curated
anamox3_curated_scaffold_2790_7
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(5827..7170)
DNA (1344bp) protein (448aa)
NADH-dependent dehydrogenase Tax=Spirosoma luteum RepID=UPI0003734578
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:ACT95690.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
anamox3_curated_scaffold_2790_8
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(7582..8592)
DNA (1011bp) protein (337aa)
hypothetical protein Tax=Niabella aurantiaca RepID=UPI00036AD123
Contig31, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77663.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
LacI family transcriptional regulator
anamox3_curated_scaffold_2790_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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8674..9264
DNA (591bp) protein (197aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC96220.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
RNA polymerase, sigma-24 subunit, ECF subfamily bin=GWE2_Bacteroidetes_40_15 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
ECF subfamily RNA polymerase sigma-24 subunit
anamox3_curated_scaffold_2790_10
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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9344..10537
DNA (1194bp) protein (398aa)
Putative anti-sigma factor {ECO:0000313|EMBL:GAO43369.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
FecR protein bin=GWF2_Bacteroidetes_40_14 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
anti-FecI sigma factor FecR
anamox3_curated_scaffold_2790_11
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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10690..11007
DNA (318bp) protein (106aa)
TonB-dependent receptor plug Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TM27_NIAKG
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAO43370.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
TonB-dependent receptor plug
Displaying 11 items

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