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anamox1_curated_scaffold_1561

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_1561_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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2..1966
DNA (1965bp) protein (655aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XI93_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60354.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
BNR/Asp-box repeat protein
anamox1_curated_scaffold_1561_2
Bdellovibrio exovorus, Bdellovibrio, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2000..3517)
DNA (1518bp) protein (506aa)
RNA polymerase sigma-54 factor Tax=Bdellovibrio exovorus JSS RepID=M4V6F6_9DELT
RNA polymerase sigma-54 factor
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio.;" source="Bdellovibrio exovorus JSS.;"
anamox1_curated_scaffold_1561_3
Jeotgalibacillus soli Cunha et al. 2012, Jeotgalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3664..5412)
DNA (1749bp) protein (583aa)
Rhomboid protease {ECO:0000313|EMBL:KIL44400.1}; EC=3.4.21.105 {ECO:0000313|EMBL:KIL44400.1};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Jeotgalibacillus.;" source="Jeotgalibacillus soli Cunha et al. 2012.;"
hypothetical protein Tax=Bacillus sp. ZYK RepID=UPI0002FDD5F7
anamox1_curated_scaffold_1561_4
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5518..7605)
DNA (2088bp) protein (696aa)
DNA ligase (EC:6.5.1.2)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
DNA ligase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CR27_DESK7
anamox1_curated_scaffold_1561_5
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(7744..10269)
DNA (2526bp) protein (842aa)
Phosphorylase bin=GWF2_Bacteroidetes_38_335 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
glycogen/starch/alpha-glucan phosphorylase
Tax=GWF2_Bacteroidetes_38_335_curated
anamox1_curated_scaffold_1561_6
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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10700..11398
DNA (699bp) protein (233aa)
Uncharacterized protein Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ATN7_PELPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL00708.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
anamox1_curated_scaffold_1561_7
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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11449..12426
DNA (978bp) protein (326aa)
Uncharacterized protein Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ATN6_PELPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL00707.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
anamox1_curated_scaffold_1561_8
unknown

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12465..12704
DNA (240bp) protein (80aa)

This feature has no annotations

anamox1_curated_scaffold_1561_9

Not on your lists

13273..13824
DNA (552bp) protein (184aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM93035.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
DegT/DnrJ/EryC1/StrS aminotransferase bin=GWF2_Lentisphaerae_52_8 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
glutamine--scyllo-inositol transaminase
anamox1_curated_scaffold_1561_10
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13923..16166)
DNA (2244bp) protein (748aa)
RNA polymerase sigma factor RpoD Tax=Myxococcus xanthus RepID=RPOD_MYXXA
rpoD; RNA polymerase sigma factor RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
anamox1_curated_scaffold_1561_11
R_Deltaproteobacteria_44_53, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16173..18035)
DNA (1863bp) protein (621aa)
DNA primase Tax=Paenibacillus vortex V453 RepID=E5YUB2_9BACL
DNA primase
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_53_curated
anamox1_curated_scaffold_1561_12
gamma proteobacterium HIMB55, Gammaproteobacteria, Proteobacteria, Bacteria

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18265..19047
DNA (783bp) protein (261aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="gamma proteobacterium HIMB55.;"
Ribosomal RNA small subunit methyltransferase E Tax=gamma proteobacterium HIMB55 RepID=H3NUU5_9GAMM
hypothetical protein
Displaying 12 items

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