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anamox1_curated_scaffold_2456

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_2456_1
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1..1782)
DNA (1782bp) protein (594aa)
NADH dehydrogenase (EC:1.6.99.5)
NADH dehydrogenase {ECO:0000313|EMBL:AKD03964.1}; EC=1.6.99.5 {ECO:0000313|EMBL:AKD03964.1};; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
NADH-quinone oxidoreductase, chain G Tax=Caldithrix abyssi DSM 13497 RepID=H1XWD8_9BACT
anamox1_curated_scaffold_2456_2
Caldithrix abyssi, Caldithrix, Bacteria

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comp(1786..3069)
DNA (1284bp) protein (428aa)
NADH dehydrogenase (EC:1.6.99.5)
NADH-quinone oxidoreductase, F subunit Tax=Caldithrix abyssi DSM 13497 RepID=H1XWD7_9BACT
NADH-quinone oxidoreductase, F subunit {ECO:0000313|EMBL:EHO40719.1}; species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
anamox1_curated_scaffold_2456_3
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

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comp(3079..3543)
DNA (465bp) protein (155aa)
NADH-quinone oxidoreductase subunit E; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3] bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
NADH-quinone oxidoreductase subunit E
Tax=RBG_16_Caldithrix_48_16_curated
anamox1_curated_scaffold_2456_4
Candidatus Kuenenia stuttgartiensis, Candidatus Kuenenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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comp(3573..5381)
DNA (1809bp) protein (603aa)
NADH dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00003787}; EC=1.6.99.5 {ECO:0000256|SAAS:SAAS00003787};; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Kuenenia.;" source="Candidatus Kuenenia stuttgartiensis.;"
bifunctional NADH:ubiquinone oxidoreductase subunit C/D (EC:1.6.99.5)
Strongly similar to NADH dehydrogenase I chain C/D Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q758_9BACT
anamox1_curated_scaffold_2456_5
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5427..6071)
DNA (645bp) protein (215aa)
NADH-quinone oxidoreductase subunit beta (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
NADH-quinone oxidoreductase subunit B Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C517_NITHN
anamox1_curated_scaffold_2456_6
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

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comp(6075..6509)
DNA (435bp) protein (145aa)
yhcV_[H]; CBS domain containing membrane protein bin=bin3_NC10 species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
putative signal transduction protein with CBS domains
Tax=RBG_16_Caldithrix_48_16_curated
anamox1_curated_scaffold_2456_7
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6567..6986)
DNA (420bp) protein (140aa)
NADH:ubiquinone oxidoreductase subunit 3 (chain A) (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
NADH-quinone oxidoreductase subunit A Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CCU0_DESTA
anamox1_curated_scaffold_2456_8
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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7347..7700
DNA (354bp) protein (118aa)
Zinc finger transcriptional regulator, TraR/DksA family Tax=Geobacter metallireducens RepID=Q39QQ7_GEOMG
TraR/DksA family zinc finger transcriptional regulator
Zinc finger transcriptional regulator, TraR/DksA family {ECO:0000313|EMBL:ABB33417.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
anamox1_curated_scaffold_2456_9
Desulfococcus oleovorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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7728..8258
DNA (531bp) protein (177aa)
shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus oleovorans (strain DSM 6200 / Hxd3).;"
Shikimate kinase Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZZP1_DESOH
anamox1_curated_scaffold_2456_10
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

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comp(8302..11508)
DNA (3207bp) protein (1069aa)
Hypothetical membrane protein bin=GWC2_Chloroflexi_49_37 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
putative PKD domain-containing protein
Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
anamox1_curated_scaffold_2456_11
Denitrovibrio acetiphilus, Denitrovibrio, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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11783..13060
DNA (1278bp) protein (426aa)
glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Denitrovibrio.;" source="Denitrovibrio acetiphilus (strain DSM 12809 / N2460).;"
serine hydroxymethyltransferase Tax=Sporichthya polymorpha RepID=UPI00036BDAF0
anamox1_curated_scaffold_2456_12
unknown

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comp(13191..13373)
DNA (183bp) protein (61aa)

This feature has no annotations

Displaying 12 items

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