ggKbase | organisms

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: anamox1_Bacteria_57_5 Manually curated genome
Original version: anamox1_Bacteria_57_5

Properties

Avg. coverage: 1.00 Longest contig: 19.66 Kbp Bin length: 3.33 Mbp GC content: 56.30 %

Contigs count: 813 Features count: 3846 rRNAs count: 0 tRNAs count: 21

Genome completeness

partial RP 33 / 55 MC: 2 BSCG 35 / 51 MC: 2 ASCG 9 / 38 MC: 2

Displaying items 751-800 of 813 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
anamox1_curated_scaffold_30971 Species: BJP_IG2158_Rhodobacterales_69_12 (50%)	2	2650 bp	53.66	1.00	77.55
anamox1_curated_scaffold_20106 Species: Chloroflexus aggregans (50%)	2	2413 bp	57.85	1.00	87.90
anamox1_curated_scaffold_22482 Species: RBG_13_Chloroflexi_68_17_curated (50%)	2	2171 bp	58.04	1.00	100.18
anamox1_curated_scaffold_11416 Species: Ktedonobacter racemifer (50%)	2	3744 bp	58.44	1.00	99.20
anamox1_curated_scaffold_19139 Species: RBG_19FT_COMBO_Chloroflexi_55_16_curated (50%)	2	2506 bp	57.22	1.00	96.85
anamox1_curated_scaffold_21070 Species: RBG_16_Chloroflexi_56_8_curated (50%)	2	2325 bp	55.61	1.00	93.03
anamox1_curated_scaffold_13330 Species: RBG_19FT_COMBO_Chloroflexi_62_14_curated (50%)	2	3304 bp	57.38	1.00	93.61
anamox1_curated_scaffold_49840 Species: CG_Anaero_01 (50%)	2	2062 bp	59.65	1.00	78.42
anamox1_curated_scaffold_18316 Species: BJP_IG2158_Anaerolineales_38_74 (50%)	2	3185 bp	55.35	1.00	86.00
anamox1_curated_scaffold_23586 Species: uncultured bacterium (50%)	2	2089 bp	56.49	1.00	97.51
anamox1_curated_scaffold_15692 Species: RBG_16_Chloroflexi_54_18_curated (50%)	2	2933 bp	57.14	1.00	96.56
anamox1_curated_scaffold_22960	2	2171 bp	56.20	1.00	97.84
anamox1_curated_scaffold_22193 Species: Herpetosiphon aurantiacus (50%)	2	2229 bp	56.71	1.00	97.71
anamox1_curated_scaffold_9714 Species: Sphaerobacter thermophilus (50%)	2	5076 bp	54.96	1.00	88.06
anamox1_curated_scaffold_24066 Species: CG_Anaero_02 (50%)	2	1763 bp	58.08	1.00	65.00
anamox1_curated_scaffold_22464 Species: RBG_16_Chloroflexi_57_11_curated (50%)	2	2207 bp	57.95	1.00	94.88
anamox1_curated_scaffold_23925 Species: RBG_16_Chloroflexi_63_12_curated (50%)	2	2099 bp	56.17	1.00	84.90
anamox1_curated_scaffold_22376 Species: CG_Anaero_02 (50%)	2	1799 bp	56.09	1.00	98.39
anamox1_curated_scaffold_21160 Species: RBG_16_Chloroflexi_54_18_curated (50%)	2	2319 bp	60.97	1.00	93.01
anamox1_curated_scaffold_23023 Species: RBG_16_Chloroflexi_58_14_curated (50%)	2	2128 bp	52.26	1.00	65.55
anamox1_curated_scaffold_24895 Species: RBG_16_Chloroflexi_58_14_curated (50%)	2	1971 bp	53.93	1.00	96.96
anamox1_curated_scaffold_25228 Species: Herpetosiphon aurantiacus (50%)	2	2014 bp	56.80	1.00	91.16
anamox1_curated_scaffold_24551 Species: RBG_16_Chloroflexi_57_9_curated (50%)	2	2059 bp	55.08	1.00	93.54
anamox1_curated_scaffold_21993 Species: RLO_PLX_64_10 (50%)	2	2178 bp	58.63	1.00	94.08
anamox1_curated_scaffold_20956 Species: Roseiflexus castenholzii (50%)	2	2335 bp	55.37	1.00	79.02
anamox1_curated_scaffold_12655 Species: RBG_13_Chloroflexi_56_8_curated (50%)	2	3450 bp	59.04	1.00	95.74
anamox1_curated_scaffold_12411 Species: bacterium UASB14 (50%)	2	3495 bp	62.89	1.00	99.57
anamox1_curated_scaffold_15490 Species: RBG_16_Chloroflexi_54_18_curated (50%)	2	2934 bp	61.25	1.00	97.44
anamox1_curated_scaffold_22486 Species: CG_Anaero_02 (50%)	2	2131 bp	59.13	1.00	97.28
anamox1_curated_scaffold_22649 Species: marine sediment metagenome (50%)	2	2164 bp	61.04	1.00	88.03
anamox1_curated_scaffold_23785 Species: RBG_13_Chloroflexi_68_17_curated (50%)	2	2018 bp	55.90	1.00	86.82
anamox1_curated_scaffold_21176 Species: uncultured prokaryote (50%)	2	2280 bp	58.38	1.00	66.18
anamox1_curated_scaffold_25091 Species: RBG_16_Chloroflexi_57_9_curated (50%)	2	2023 bp	57.83	1.00	88.38
anamox1_curated_scaffold_21826 Species: RBG_19FT_COMBO_Chloroflexi_55_16_curated (50%)	2	2184 bp	59.39	1.00	89.84
anamox1_curated_scaffold_24953 Species: Ktedonobacter racemifer (50%)	2	2207 bp	56.86	1.00	72.04
anamox1_curated_scaffold_18386 Species: RBG_19FT_COMBO_Chloroflexi_62_14_curated (50%)	2	2462 bp	54.71	1.00	87.00
anamox1_curated_scaffold_25259 Species: Roseiflexus castenholzii (100%)	2	2013 bp	55.89	1.00	93.29
anamox1_curated_scaffold_21056 Species: Desulfovibrio alkalitolerans (50%)	2	2207 bp	58.81	1.00	93.79
anamox1_curated_scaffold_20632 Species: RBG_16_Chloroflexi_56_8_curated (50%)	2	2491 bp	54.92	1.00	75.39
anamox1_curated_scaffold_53683 Species: RBG_13_Chloroflexi_68_17_curated (50%)	2	2027 bp	61.42	1.00	94.87
anamox1_curated_scaffold_24349	2	2071 bp	55.72	1.00	37.52
anamox1_curated_scaffold_21594 Species: Roseiflexus sp. RS-1 (50%)	2	2280 bp	60.92	1.00	98.29
anamox1_curated_scaffold_8474 Species: Ktedonobacter racemifer (50%)	2	4783 bp	60.44	1.00	94.02
anamox1_curated_scaffold_21085 Species: RBG_16_Chloroflexi_63_12_curated (50%)	2	2301 bp	54.15	1.00	96.48
anamox1_curated_scaffold_14922 Species: Sphaerobacter thermophilus (50%)	2	2946 bp	58.76	1.00	99.08
anamox1_curated_scaffold_17090 Species: CG_Anaero_02 (50%)	2	2417 bp	55.44	1.00	94.58
anamox1_curated_scaffold_21439 Species: Roseiflexus sp. RS-1 (50%)	2	2292 bp	57.02	1.00	98.17
anamox1_curated_scaffold_22562 Species: RBG_13_Chloroflexi_68_17_curated (50%)	2	2201 bp	59.15	1.00	96.50
anamox1_curated_scaffold_24340 Species: GWC2_Chloroflexi_49_37_curated (50%)	2	1927 bp	57.97	1.00	94.03
anamox1_curated_scaffold_17820 Species: RBG_16_Chloroflexi_54_18_curated (50%)	2	2646 bp	54.20	1.00	98.98

Displaying items 751-800 of 813 in total

anamox1_Bacteria_57_5_curated

anamox1_Bacteria_56_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

anamox1_Bacteria_57_5_curated

anamox1_Bacteria_56_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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