ggKbase home page

anamox1_curated_scaffold_238

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_238_1
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1..300
DNA (300bp) protein (100aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:ADY54373.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ADY54373.1};; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
Nucleotide sugar dehydrogenase Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7W5_PEDSD
anamox1_curated_scaffold_238_2
Schleiferia thermophila, Schleiferia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

301..1347
DNA (1047bp) protein (349aa)
Nucleoside-diphosphate-sugar epimerase Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R017_OWEHD
Epimerase {ECO:0000313|EMBL:KFD38324.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Schleiferiaceae; Schleiferia.;" source="Schleiferia thermophila str. Yellowstone.;"
nucleoside-diphosphate-sugar epimerase
anamox1_curated_scaffold_238_3
uncultured Desulfofustis sp. PB-SRB1, Desulfofustis, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1545..1871
DNA (327bp) protein (109aa)
NADH:ubiquinone oxidoreductase subunit 5 Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4JJK6_9DELT
NADH:ubiquinone oxidoreductase subunit 5 {ECO:0000313|EMBL:ESQ12505.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfofustis; environmental samples.;" source="uncultured Desulfofustis sp. PB-SRB1.;"
hypothetical protein
anamox1_curated_scaffold_238_4
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1960..2802
DNA (843bp) protein (281aa)
ABC transporter substrate-binding protein Tax=Flavobacterium rivuli RepID=UPI0003826030
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGO86133.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
hypothetical protein
anamox1_curated_scaffold_238_5
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

3115..3687
DNA (573bp) protein (191aa)
hexapeptide transferase Tax=Nafulsella turpanensis RepID=UPI00036696AE
Hexapeptide transferase {ECO:0000313|EMBL:KIF34018.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
transferase
anamox1_curated_scaffold_238_6
CG_Bacteroid_01, Bacteroidetes, Bacteria

Not on your lists

3684..4721
DNA (1038bp) protein (346aa)
Oxidoreductase domain protein Tax=Niabella soli DSM 19437 RepID=H1NJJ0_9SPHI
oxidoreductase
Tax=CG_Bacteroid_01
anamox1_curated_scaffold_238_7
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4705..6003
DNA (1299bp) protein (433aa)
Nucleotide sugar dehydrogenase Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2I992_FLUTR
nucleotide sugar dehydrogenase
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
anamox1_curated_scaffold_238_8
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6011..7189
DNA (1179bp) protein (393aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
dTDP-glucose 4,6-dehydratase Tax=Rudanella lutea RepID=UPI00037365D2
dTDP-glucose 4,6-dehydratase
anamox1_curated_scaffold_238_9
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7189..7938
DNA (750bp) protein (250aa)
PHP domain protein bin=GWF2_Bacteroidetes_33_38 species=uncultured Sulfuricurvum sp. RIFRC-1 genus=Sulfuricurvum taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
hypothetical protein
Tax=GWF2_Bacteroidetes_33_38_curated
anamox1_curated_scaffold_238_10
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7988..8863)
DNA (876bp) protein (292aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
Malonyl CoA-acyl carrier protein transacylase Tax=Prevotella sp. CAG:1031 RepID=R5AT83_9BACT
ACP S-malonyltransferase
anamox1_curated_scaffold_238_11
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9063..9812)
DNA (750bp) protein (250aa)
Membrane protein {ECO:0000313|EMBL:KJS05160.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
Putative uncharacterized protein bin=GWF2_Bacteroidetes_41_31 species=Mucilaginibacter paludis genus=Mucilaginibacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
ybhL; Inner membrane protein YbhL
anamox1_curated_scaffold_238_12
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9841..10515)
DNA (675bp) protein (225aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
GTP cyclohydrolase 1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KM92_SOLCM
GTP cyclohydrolase I
anamox1_curated_scaffold_238_13
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10519..10938)
DNA (420bp) protein (140aa)
Uncharacterized protein Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2I9N5_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA43031.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
anamox1_curated_scaffold_238_14
GWF2_Bacteroidetes_43_63_curated, Bacteroidetes, Bacteria

Not on your lists

11305..12750
DNA (1446bp) protein (482aa)
Uncharacterized protein Tax=Flavobacterium limnosediminis JC2902 RepID=V6SPS8_9FLAO
hypothetical protein
Tax=GWF2_Bacteroidetes_43_63_curated
anamox1_curated_scaffold_238_15
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12872..15100
DNA (2229bp) protein (743aa)
Putative uncharacterized protein bin=GWB2_Ignavibacteria_35_12 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
putative photosystem II stability/assembly factor-like protein
Tax=BJP_08E140C01_Bacteriodales_41_10
anamox1_curated_scaffold_238_16
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15160..16437
DNA (1278bp) protein (426aa)
seryl-tRNA ligase (EC:6.1.1.11)
Seryl-tRNA synthetase Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IYJ9_9PORP
Seryl-tRNA synthetase {ECO:0000313|EMBL:EGK01634.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
anamox1_curated_scaffold_238_17
unknown

Not on your lists

16461..16976
DNA (516bp) protein (172aa)

This feature has no annotations

anamox1_curated_scaffold_238_18
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16973..18853
DNA (1881bp) protein (627aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS05430.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
Tetratricopeptide-like helical bin=GWF2_Bacteroidetes_33_38 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
hypothetical protein
anamox1_curated_scaffold_238_19
Owenweeksia hongkongensis, Owenweeksia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18850..19158
DNA (309bp) protein (103aa)
Uncharacterized protein Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8QZZ6_OWEHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV32636.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Owenweeksia.;" source="Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL; B-23963).;"
anamox1_curated_scaffold_238_20
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists


19155..19922
DNA (768bp) protein (256aa)
Ribosomal RNA small subunit methyltransferase A Tax=Fibrisoma limi BUZ 3 RepID=I2GJW5_9BACT
Ribosomal RNA small subunit methyltransferase A
Tax=BJP_IG2103_Bacteroidetes_41_9
anamox1_curated_scaffold_238_21
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(19953..21209)
DNA (1257bp) protein (419aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
aspartate kinase (EC:2.7.2.4)
Aspartokinase Tax=Fibrisoma limi BUZ 3 RepID=I2GSJ2_9BACT
anamox1_curated_scaffold_238_22
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21206..21682)
DNA (477bp) protein (159aa)
GCN5-related N-acetyltransferase Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SAB4_PEDSD
Contig22, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78169.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
N-acetyltransferase GCN5
anamox1_curated_scaffold_238_23
Schleiferia thermophila, Schleiferia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21808..22788
DNA (981bp) protein (327aa)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Schleiferiaceae; Schleiferia.;" source="Schleiferia thermophila str. Yellowstone.;"
Fructose-1,6-bisphosphatase class 1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P284_VIBME
fructose-1,6-bisphosphatase
anamox1_curated_scaffold_238_24
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

22884..24668
DNA (1785bp) protein (595aa)
Porphyromonas-type peptidyl-arginine deiminase bin=GWE2_Bacteroidetes_42_42 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Bacteroidetes_42_42 organism_group=Bacteroidetes organism_desc=Good +
peptidylarginine deiminase-like protein
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
anamox1_curated_scaffold_238_25
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

24809..26086
DNA (1278bp) protein (426aa)
4-hydroxybutyrate CoA transferase Tax=Echinicola pacifica RepID=UPI00035D6450
acetyl-CoA hydrolase
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
anamox1_curated_scaffold_238_26
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26101..26499)
DNA (399bp) protein (133aa)
Uncharacterized protein Tax=Gillisia limnaea DSM 15749 RepID=H2BUG8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EZH74764.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
hypothetical protein
anamox1_curated_scaffold_238_27
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26630..28246
DNA (1617bp) protein (539aa)
Sulfate permease Tax=Fulvivirga imtechensis AK7 RepID=L8JUN4_9BACT
Sulfate permease {ECO:0000313|EMBL:ELR71953.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
sulfate transporter
anamox1_curated_scaffold_238_28
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(28262..28732)
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=Sphingobacterium sp. (strain 21) RepID=F4CF10_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:GAL83652.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
hypothetical protein
anamox1_curated_scaffold_238_29
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28860..30113)
DNA (1254bp) protein (418aa)
Integral membrane sensor signal transduction histidine kinase Tax=Sphingobacterium sp. (strain 21) RepID=F4CF09_SPHS2
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:ADZ79110.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
anamox1_curated_scaffold_238_30
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30110..30859)
DNA (750bp) protein (250aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G4L7_ECHVK
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AGA79775.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
Displaying items 1-30 of 70 in total

View Taxonomy