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anamox1_curated_scaffold_4052

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_4052_1
marine actinobacterium MedAcidi-G2B, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..195)
DNA (195bp) protein (65aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G2B.;"
rpoA; DNA-directed RNA polymerase alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z262_9ACTN
anamox1_curated_scaffold_4052_2
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(248..868)
DNA (621bp) protein (207aa)
30S ribosomal protein S4 Tax=Massilia timonae CCUG 45783 RepID=K9DIW8_9BURK
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;"
rpsD; ribosomal protein S4
anamox1_curated_scaffold_4052_3
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(983..1390)
DNA (408bp) protein (136aa)
30S ribosomal protein S11 Tax=Rhodocyclaceae RepID=RS11_AROAE
rpsK; 30S ribosomal protein S11
Tax=GWA2_Rhodocyclales_65_20_curated
anamox1_curated_scaffold_4052_4
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1418..1798)
DNA (381bp) protein (127aa)
30S ribosomal protein S13 Tax=Chitiniphilus shinanonensis RepID=UPI00036856C1
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
rpsM; 30S ribosomal protein S13
anamox1_curated_scaffold_4052_5
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1837..1950)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QNV6_AZOSU
50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
anamox1_curated_scaffold_4052_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2044..2262)
DNA (219bp) protein (73aa)
translation initiation factor IF-1 Tax=Leeia oryzae RepID=UPI0003601808
Translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075, ECO:0000313|EMBL:KIO47969.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
anamox1_curated_scaffold_4052_7
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2262..3584)
DNA (1323bp) protein (441aa)
Protein translocase subunit SecY Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QNV8_AZOSU
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
preprotein translocase subunit SecY
anamox1_curated_scaffold_4052_8
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3634..4065)
DNA (432bp) protein (144aa)
50S ribosomal protein L15 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
50S ribosomal protein L15
Tax=GWA2_Gallionellales_55_18_curated
anamox1_curated_scaffold_4052_9
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4075..4263)
DNA (189bp) protein (63aa)
50S ribosomal protein L30 Tax=uncultured beta proteobacterium RepID=H5SGY2_9PROT
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
rpmD; 50S ribosomal protein L30
anamox1_curated_scaffold_4052_10
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4265..4726)
DNA (462bp) protein (154aa)
30S ribosomal protein S5 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYX6_9BURK
rpsE; 30S ribosomal protein S5
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
anamox1_curated_scaffold_4052_11
unknown

Not on your lists

4900..5055
DNA (156bp) protein (52aa)

This feature has no annotations

anamox1_curated_scaffold_4052_12
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5258..5785)
DNA (528bp) protein (176aa)
50S ribosomal protein L6 Tax=Azoarcus sp. KH32C RepID=H0PUJ4_9RHOO
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
anamox1_curated_scaffold_4052_13
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5872..6267)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 Tax=Pandoraea RepID=V5UCR1_9BURK
30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
anamox1_curated_scaffold_4052_14
Taylorella asinigenitalis, Taylorella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6289..6594)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI00037D861B
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Taylorella.;" source="Taylorella asinigenitalis (strain MCE3).;"
anamox1_curated_scaffold_4052_15
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6606..7145)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYY1_9BURK
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
rplE; 50S ribosomal protein L5
anamox1_curated_scaffold_4052_16
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7154..7468)
DNA (315bp) protein (105aa)
50S ribosomal protein L24 Tax=Uliginosibacterium gangwonense RepID=UPI0003644928
50S ribosomal protein L24
Tax=RBG_16_Betaproteobacteria_66_20_curated
anamox1_curated_scaffold_4052_17
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7516..7884)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 bin=GWE2_Gallionellales_58_10 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
rplN; 50S ribosomal protein L14
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
Displaying 17 items

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