ggKbase home page

anamox1_curated_scaffold_360

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_360_1
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..511)
DNA (510bp) protein (170aa)
Inner-membrane translocator Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQ79_9BURK
Inner-membrane translocator {ECO:0000313|EMBL:EGJ10497.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
livH; putative high-affinity branched-chain amino acid ABC transporter permease LivH
anamox1_curated_scaffold_360_2
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(757..3384)
DNA (2628bp) protein (876aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
2-oxo-acid dehydrogenase E1 subunit (EC:1.2.4.1)
pyruvate dehydrogenase E1 Tax=Chryseobacterium taeanense RepID=UPI000303D82A
anamox1_curated_scaffold_360_3
Osedax symbiont Rs2, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3537..4085)
DNA (549bp) protein (183aa)
Uncharacterized protein Tax=Osedax symbiont Rs2 RepID=S6HYK9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPJ51783.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont Rs2.;"
hypothetical protein
anamox1_curated_scaffold_360_4
Osedax symbiont Rs2, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4122..5429)
DNA (1308bp) protein (436aa)
Cystathionine beta-lyase/cystathionine gamma-synthase Tax=Osedax symbiont Rs2 RepID=S6HN54_9GAMM
Cystathionine beta-lyase/cystathionine gamma-synthase {ECO:0000313|EMBL:EPJ51784.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont Rs2.;"
Cystathionine beta-lyase or cystathionine gamma-synthase
anamox1_curated_scaffold_360_5
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5753..6214)
DNA (462bp) protein (154aa)
AsnC family transcriptional regulator Tax=Acidovorax sp. NO-1 RepID=H0BT67_9BURK
AsnC family transcriptional regulator {ECO:0000313|EMBL:KJA09451.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
asnC family transcriptional regulator
anamox1_curated_scaffold_360_6
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6342..7565
DNA (1224bp) protein (408aa)
methionine gamma-lyase (EC:4.4.1.11)
Methionine gamma-lyase Tax=Acidovorax sp. NO-1 RepID=H0BT68_9BURK
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
anamox1_curated_scaffold_360_7
unknown

Not on your lists

7816..8166
DNA (351bp) protein (117aa)
hypothetical protein
anamox1_curated_scaffold_360_8
Prochlorococcus phage P-HM2, Caudovirales, Viruses

Not on your lists

8357..9382
DNA (1026bp) protein (342aa)
hypothetical protein Tax=Variovorax paradoxus RepID=UPI0003611460
Putative uncharacterized protein {ECO:0000313|EMBL:ADO99884.1}; species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Prochlorococcus phage P-HM2.;"
anamox1_curated_scaffold_360_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9399..9602)
DNA (204bp) protein (68aa)
Uncharacterized protein Tax=Eikenella corrodens CC92I RepID=V7IG88_EIKCO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
anamox1_curated_scaffold_360_10
Cyanobium sp. CACIAM 14, Cyanobium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9797..10027)
DNA (231bp) protein (77aa)
Uncharacterized protein {ECO:0000313|EMBL:KEF41663.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobium.;" source="Cyanobium sp. CACIAM 14.;"
anamox1_curated_scaffold_360_11
Cyanobium sp. CACIAM 14, Cyanobium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9985..10332)
DNA (348bp) protein (116aa)
Uncharacterized protein {ECO:0000313|EMBL:KEF41663.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobium.;" source="Cyanobium sp. CACIAM 14.;"
anamox1_curated_scaffold_360_trna_3
unknown

Not on your lists

comp(10554..10626)
DNA (73bp)
transferRNA His
anamox1_curated_scaffold_360_12
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10662..12569)
DNA (1908bp) protein (636aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
ppiD; putative peptidyl-prolyl cis-trans isomerase PpiD (EC:5.2.1.8)
Putative peptidyl-prolyl cis-trans isomerase transmembrane protein Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LKA0_9BURK
anamox1_curated_scaffold_360_trna_2
unknown

Not on your lists

comp(12751..12823)
DNA (73bp)
transferRNA Val
anamox1_curated_scaffold_360_13
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12838..13107)
DNA (270bp) protein (90aa)
transcriptional regulator Tax=Caldimonas manganoxidans RepID=UPI0003650061
nucleoid protein Hbs
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_360_14
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13298..14209)
DNA (912bp) protein (304aa)
Putative uncharacterized protein Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y0T9_LEPCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB34197.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
anamox1_curated_scaffold_360_15
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14220..14786)
DNA (567bp) protein (189aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=Hylemonella gracilis ATCC 19624 RepID=F3KQY9_9BURK
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EGI77690.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
anamox1_curated_scaffold_360_16
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14847..15377)
DNA (531bp) protein (177aa)
Uncharacterized protein Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LK97_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ08765.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
hypothetical protein
anamox1_curated_scaffold_360_17
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15400..17535)
DNA (2136bp) protein (712aa)
UvrABC system protein C Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LK96_9BURK
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
uvrC; UvrABC system protein C UvrC
anamox1_curated_scaffold_360_18
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17594..18649
DNA (1056bp) protein (352aa)
hypothetical protein Tax=Caldimonas manganoxidans RepID=UPI00035FB304
Putative uncharacterized protein {ECO:0000313|EMBL:EHR71146.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
anamox1_curated_scaffold_360_19
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18809..19363
DNA (555bp) protein (185aa)
Elongation factor P Tax=Rubrivivax RepID=I0HPM4_RUBGI
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
efp; elongation factor P Efp
anamox1_curated_scaffold_360_20
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19409..21478
DNA (2070bp) protein (690aa)
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPM2_RUBGI
putative oxidoreductase
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000256|HAMAP-Rule:MF_01102, ECO:0000256|SAAS:SAAS00084295}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000256|HAMAP-Rule:MF_01102};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_360_21
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21438..22118)
DNA (681bp) protein (227aa)
cbbI; ribose-5-phosphate isomerase A (EC:5.3.1.6)
Ribose-5-phosphate isomerase A Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LK91_9BURK
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_360_22
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22156..23220
DNA (1065bp) protein (355aa)
pyrD; dihydroorotate dehydrogenase PyrD (EC:1.3.5.2)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Dihydroorotate dehydrogenase (quinone) Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPL9_RUBGI
anamox1_curated_scaffold_360_23
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23217..23636
DNA (420bp) protein (140aa)
VirB8 protein bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_360_24
gamma proteobacterium NOR5-3, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23759..24700
DNA (942bp) protein (314aa)
NAD-dependent epimerase/dehydratase Tax=gamma proteobacterium NOR5-3 RepID=B8KME6_9GAMM
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EED31196.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium NOR5-3.;"
nad-dependent epimerase/dehydratase
anamox1_curated_scaffold_360_25
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24820..25995
DNA (1176bp) protein (392aa)
Uncharacterized protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HQ81_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL95168.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_360_26
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25922..26980)
DNA (1059bp) protein (353aa)
Mechanosensitive ion channel family protein Tax=Ralstonia sp. PBA RepID=I9W642_9RALS
Mechanosensitive ion channel family protein {ECO:0000313|EMBL:EIZ03914.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
mechanosensitive ion channel protein MscS
anamox1_curated_scaffold_360_27
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27212..29380
DNA (2169bp) protein (723aa)
Diguanylate cyclase/phosphodiesterase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLB7_9BURK
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EGJ09135.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
diguanylate phosphodiesterase with GAF sensor(s)
anamox1_curated_scaffold_360_28
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29587..31428
DNA (1842bp) protein (614aa)
Oligoendopeptidase F PepF Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HWF3_RUBGI
pepF; oligoendopeptidase F PepF
Oligoendopeptidase F PepF {ECO:0000313|EMBL:BAL97340.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Displaying items 1-30 of 104 in total

View Taxonomy