ggKbase home page

anamox1_curated_scaffold_2028

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_2028_1
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..616
DNA (615bp) protein (205aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
pntB; NAD(P) transhydrogenase subunit beta (EC:1.6.1.2)
pyridine nucleotide transhydrogenase Tax=Methyloversatilis universalis RepID=UPI0003692846
anamox1_curated_scaffold_2028_2
unknown

Not on your lists

856..1437
DNA (582bp) protein (194aa)

This feature has no annotations

anamox1_curated_scaffold_2028_3
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1711..3378
DNA (1668bp) protein (556aa)
fadD; long-chain-fatty-acid-CoA ligase FadD (EC:6.2.1.3)
Putative long-chain-fatty-acid--CoA ligase protein Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSI7_9BURK
Putative long-chain-fatty-acid--CoA ligase protein {ECO:0000313|EMBL:EGJ11305.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
anamox1_curated_scaffold_2028_4
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3428..4135
DNA (708bp) protein (236aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
rsmE; ribosomal RNA small subunit methyltransferase E RsmE (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSI5_9BURK
anamox1_curated_scaffold_2028_5
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4339..5379
DNA (1041bp) protein (347aa)
Putative branched-chain amino acid transport system permease protein Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3I1_AROAE
branched-chain amino acid transport system permease
Tax=GWA2_Rhodocyclales_65_20_curated
anamox1_curated_scaffold_2028_6
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5376..7184
DNA (1809bp) protein (603aa)
Putative branched-chain amino acid transport system protein Tax=Azoarcus sp. KH32C RepID=H0Q2X4_9RHOO
putative branched-chain amino acid transport system protein
Tax=GWA2_Rhodocyclales_65_20_curated
anamox1_curated_scaffold_2028_7
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7232..7954
DNA (723bp) protein (241aa)
metal-dependent hydrolase Tax=Azoarcus toluclasticus RepID=UPI000379684A
ABC transporter related protein
Tax=GWA2_Rhodocyclales_65_20_curated
anamox1_curated_scaffold_2028_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8047..9204
DNA (1158bp) protein (386aa)
Receptor family ligand-binding protein Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X802_9BURK
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
anamox1_curated_scaffold_2028_9
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9264..10481)
DNA (1218bp) protein (406aa)
Putative RNA methylase Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HY52_RUBGI
putative RNA methylase
Putative RNA methylase {ECO:0000313|EMBL:BAL97939.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_2028_10
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10478..12031)
DNA (1554bp) protein (518aa)
RNA polymerase sigma-54 factor Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSI0_9BURK
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
rpoN; RNA polymerase sigma-54 factor RpoN
anamox1_curated_scaffold_2028_11
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12034..12807)
DNA (774bp) protein (258aa)
Putative ABC transporter ATP-binding protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HY50_RUBGI
putative ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAL97937.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_2028_12
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12804..13424)
DNA (621bp) protein (207aa)
OstA-like protein Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSH8_9BURK
lptA; putative lipopolysaccharide transport protein A LptA
Lipopolysaccharide export system protein LptA {ECO:0000256|HAMAP-Rule:MF_01914}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
anamox1_curated_scaffold_2028_13
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13526..14170)
DNA (645bp) protein (215aa)
dsbA; thiol:disulfide interchange protein DsbA (EC:5.3.4.1)
Thiol:disulfide interchange protein Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSH7_9BURK
Thiol:disulfide interchange protein {ECO:0000256|PIRNR:PIRNR001488}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
anamox1_curated_scaffold_2028_14
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14275..14928)
DNA (654bp) protein (218aa)
Hypothetical transmembrane protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HY47_RUBGI
transmembrane protein
Hypothetical transmembrane protein {ECO:0000313|EMBL:BAL97934.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_2028_15
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14925..15323)
DNA (399bp) protein (133aa)
argS; arginyl-tRNA synthetase ArgS (EC:6.1.1.19)
Arginine--tRNA ligase Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HY46_RUBGI
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
Displaying 15 items

View Taxonomy