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anamox1_curated_scaffold_1094

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_1094_1
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..608)
DNA (606bp) protein (202aa)
Rod shape-determining protein MreB Tax=Rubrivivax RepID=I0HYB3_RUBGI
mreB; rod shape-determining protein MreB
Rod shape-determining protein MreB {ECO:0000313|EMBL:EGJ10193.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
anamox1_curated_scaffold_1094_2
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

824..1123
DNA (300bp) protein (100aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WL02_9BURK
anamox1_curated_scaffold_1094_3
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1120..2649
DNA (1530bp) protein (510aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A GatA (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPC3_9BURK
anamox1_curated_scaffold_1094_4
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2651..4114
DNA (1464bp) protein (488aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
gatB; putative aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPC2_9BURK
anamox1_curated_scaffold_1094_5
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4134..4868)
DNA (735bp) protein (245aa)
Uncharacterized protein Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPC1_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_1094_6
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4869..5537)
DNA (669bp) protein (223aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_01208}; Short=OPRT {ECO:0000255|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000255|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000255|HAMAP-Rule:MF_01208};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
Orotate phosphoribosyltransferase Tax=Methylibium petroleiphilum (strain PM1) RepID=PYRE_METPP
anamox1_curated_scaffold_1094_7
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5553..6347
DNA (795bp) protein (265aa)
exoA; exodeoxyribonuclease ExoA (EC:3.1.11.2)
Exodeoxyribonuclease III Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WL08_9BURK
Exodeoxyribonuclease III {ECO:0000313|EMBL:EHR73751.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
anamox1_curated_scaffold_1094_8
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6479..6865
DNA (387bp) protein (129aa)
Uncharacterized protein Tax=Hydrogenophaga sp. PBC RepID=I4MGI7_9BURK
hypothetical protein
Tax=CG_Rhodof_02
anamox1_curated_scaffold_1094_9
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6880..7470
DNA (591bp) protein (197aa)
Uncharacterized protein Tax=Ralstonia sp. PBA RepID=I9W9S0_9RALS
Uncharacterized protein {ECO:0000313|EMBL:KGM57799.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
anamox1_curated_scaffold_1094_10
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7545..8813
DNA (1269bp) protein (423aa)
ribA; GTP cyclohydrolase II RibA (EC:3.5.4.25)
GTP cyclohydrolase II Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHX6_9BURK
GTP cyclohydrolase II {ECO:0000313|EMBL:EHR70590.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
anamox1_curated_scaffold_1094_11
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8800..10182
DNA (1383bp) protein (461aa)
Uncharacterized protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXZ4_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL97881.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_1094_12
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10211..11287
DNA (1077bp) protein (359aa)
hypothetical protein Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00037F5FFF
2-nitropropane dioxygenase
2-nitropropane dioxygenase {ECO:0000313|EMBL:ERH52956.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
anamox1_curated_scaffold_1094_13
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11284..11916
DNA (633bp) protein (211aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
Uracil phosphoribosyltransferase Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHX3_9BURK
uracil phosphoribosyltransferase
anamox1_curated_scaffold_1094_14
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11927..12352)
DNA (426bp) protein (142aa)
BLUF domain protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXR5_RUBGI
BLUF domain-containing protein
BLUF domain protein {ECO:0000313|EMBL:BAL97802.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_1094_15
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12377..13120)
DNA (744bp) protein (248aa)
folE; GTP cyclohydrolase I FolE (EC:3.5.4.16)
GTP cyclohydrolase I Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLG5_9BURK
GTP cyclohydrolase I {ECO:0000313|EMBL:EGJ09183.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
anamox1_curated_scaffold_1094_16
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13318..14595
DNA (1278bp) protein (426aa)
sun; Sun domain protein (EC:2.1.1.176)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Sun domain protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXR3_RUBGI
anamox1_curated_scaffold_1094_17
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14613..15242
DNA (630bp) protein (210aa)
Uncharacterized protein Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLG3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ09181.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
hypothetical protein
anamox1_curated_scaffold_1094_18
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15253..17568
DNA (2316bp) protein (772aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
ntrY; nitrogen regulation protein NtrY (EC:2.7.13.3)
Multi-sensor signal transduction histidine kinase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLG2_9BURK
anamox1_curated_scaffold_1094_19
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17576..18286
DNA (711bp) protein (237aa)
Two component transcriptional regulator, Fis family Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXR0_RUBGI
Fis family two component transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_1094_trna_1
unknown

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18320..18392
DNA (73bp)
transferRNA Phe
anamox1_curated_scaffold_1094_20
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(18636..19568)
DNA (933bp) protein (311aa)
Transcriptional regulator, AraC family Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J894_NOSP7
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACC79343.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punctiforme (strain ATCC 29133 / PCC 73102).;"
anamox1_curated_scaffold_1094_21
Chryseobacterium taiwanense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19977..20870
DNA (894bp) protein (298aa)
2,5-didehydrogluconate reductase (EC:1.1.1.274)
2,5-didehydrogluconate reductase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CGK7_THET1
Oxidoreductase {ECO:0000313|EMBL:KIC61927.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium taiwanense.;"
anamox1_curated_scaffold_1094_22
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20923..21405
DNA (483bp) protein (161aa)
hypothetical protein Tax=Desulfovibrio oxyclinae RepID=UPI0003606D21
cupin
Cupin superfamily barrel domain protein {ECO:0000313|EMBL:ABA88330.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
anamox1_curated_scaffold_1094_23
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21402..22130
DNA (729bp) protein (243aa)
Uncharacterized protein Tax=Pedobacter sp. BAL39 RepID=A6E7I2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KEQ28246.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
carboxymuconolactone decarboxylase
anamox1_curated_scaffold_1094_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

22142..23176
DNA (1035bp) protein (345aa)
zinc-dependent alcohol dehydrogenase oxidoreductase (EC:1.1.1.-)
Alcohol dehydrogenase GroES domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XJS1_9BACT
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:EEF59947.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
anamox1_curated_scaffold_1094_25
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23199..23597
DNA (399bp) protein (133aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI00037345AB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR59700.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
anamox1_curated_scaffold_1094_26
Pectobacterium carotovorum, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23594..24487
DNA (894bp) protein (298aa)
oxidoreductase Tax=Pseudomonas pelagia RepID=UPI0003B305E5
Oxidoreductase {ECO:0000313|EMBL:KFF61347.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium carotovorum subsp. brasiliense.;"
aldo/keto reductase
anamox1_curated_scaffold_1094_27

Not on your lists

24545..24721
DNA (177bp) protein (59aa)
Aldo/keto reductase family oxidoreductase (Fragment) Tax=mine drainage metagenome RepID=T1AXS7_9ZZZZ
Aldo/keto reductase family oxidoreductase {ECO:0000313|EMBL:EQD46895.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
aldo/keto reductase
Displaying 28 items

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