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anamox1_curated_scaffold_1953

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_1953_1
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(2..2341)
DNA (2340bp) protein (780aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
DNA-directed RNA polymerase subunit beta' Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R5N7_PIRSD
DNA-directed RNA polymerase subunit beta'
anamox1_curated_scaffold_1953_2
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2379..6101)
DNA (3723bp) protein (1241aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
DNA-directed RNA polymerase subunit beta Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R5N8_PIRSD
DNA-directed RNA polymerase subunit beta
anamox1_curated_scaffold_1953_3
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(6329..6742)
DNA (414bp) protein (138aa)
50S ribosomal protein L7/L12 Tax=Rhodopirellula RepID=Q7UI01_RHOBA
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea 6C.;"
anamox1_curated_scaffold_1953_4
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(7047..7637)
DNA (591bp) protein (197aa)
Ribosomal protein L10 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R5P1_PIRSD
50S ribosomal protein L10
Ribosomal protein L10 {ECO:0000313|EMBL:ADB17223.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
anamox1_curated_scaffold_1953_5
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(7672..8352)
DNA (681bp) protein (227aa)
50S ribosomal protein L1 Tax=Rhodopirellula europaea RepID=M2AMW6_9PLAN
rplA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea SH398.;"
anamox1_curated_scaffold_1953_6
Rhodopirellula sallentina, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(8517..8942)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 Tax=Rhodopirellula sallentina SM41 RepID=M5U8Y7_9PLAN
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
rplK; 50S ribosomal protein L11
anamox1_curated_scaffold_1953_7
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(8976..9890)
DNA (915bp) protein (305aa)
Transcription termination/antitermination protein NusG Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R5P4_PIRSD
NusG antitermination factor
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
anamox1_curated_scaffold_1953_8
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(9916..10356)
DNA (441bp) protein (147aa)
Protein translocase subunit SecE Tax=Rhodopirellula europaea RepID=M2B1X5_9PLAN
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea 6C.;"
secE; SecE protein
anamox1_curated_scaffold_1953_trna_5
unknown

Not on your lists

comp(10438..10510)
DNA (73bp)
transferRNA Trp
anamox1_curated_scaffold_1953_9
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10540..11733)
DNA (1194bp) protein (398aa)
tufA; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu Tax=Rhodopirellula maiorica SM1 RepID=M5RRI8_9PLAN
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
anamox1_curated_scaffold_1953_trna_4
unknown

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comp(11858..11930)
DNA (73bp)
transferRNA Thr
anamox1_curated_scaffold_1953_trna_3
unknown

Not on your lists

comp(11985..12055)
DNA (71bp)
transferRNA Gly
anamox1_curated_scaffold_1953_trna_2
unknown

Not on your lists

comp(12224..12305)
DNA (82bp)
transferRNA Tyr
anamox1_curated_scaffold_1953_trna_1
unknown

Not on your lists

comp(12573..12645)
DNA (73bp)
transferRNA Thr
anamox1_curated_scaffold_1953_10
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13254..14921)
DNA (1668bp) protein (556aa)
RNA polymerase sigma factor Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R5P7_PIRSD
RNA polymerase sigma-32 subunit RpoH
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
Displaying 15 items

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