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anamox1_curated_scaffold_1578

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_1578_1
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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44..586
DNA (543bp) protein (181aa)
Integrase core domain protein Tax=Vibrio cholerae RepID=K2VA01_VIBCL
transposase for insertion sequence IS6100
Transposase {ECO:0000313|EMBL:EQB33746.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
anamox1_curated_scaffold_1578_2
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(881..1117)
DNA (237bp) protein (79aa)
MerE Tax=Proteobacteria RepID=G8EFB4_PSEAI
merE; mercuric reductase
MerE {ECO:0000313|EMBL:AET25342.1}; Mercury resistance protein {ECO:0000313|EMBL:BAQ36948.1}; Uncharacterized protein {ECO:0000313|EMBL:CEI21903.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
anamox1_curated_scaffold_1578_3
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1114..1479)
DNA (366bp) protein (122aa)
Mercuric resistance transcriptional repressor protein MerD Tax=Proteobacteria RepID=E2ZVC2_PSEAI
merD; mercuric reductase
HTH-type transcriptional regulator MerD {ECO:0000313|EMBL:CEI21904.1}; MerD {ECO:0000313|EMBL:AET25343.1}; Mercuric resistance transcriptional repressor protein MerD {ECO:0000313|EMBL:CEO58243.1}; Transcriptional regulator {ECO:0000313|EMBL:BAQ36947.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
anamox1_curated_scaffold_1578_4
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1497..3182)
DNA (1686bp) protein (562aa)
Mercuric reductase {ECO:0000256|RuleBase:RU361223}; EC=1.16.1.1 {ECO:0000256|RuleBase:RU361223};; Hg(II) reductase {ECO:0000256|RuleBase:RU361223}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
Mercuric reductase Tax=Proteobacteria RepID=E2ZVC3_PSEAI
merA; mercuric reductase
anamox1_curated_scaffold_1578_5
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3254..3529)
DNA (276bp) protein (92aa)
Mercuric transport protein periplasmic component Tax=Proteobacteria RepID=MERP_SERMA
merP; mercuric reductase
Periplasmic mercury ion-binding protein {ECO:0000256|RuleBase:RU361212}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella choleraesuis.;"
anamox1_curated_scaffold_1578_6
Pseudomonas xanthomarina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3545..3895)
DNA (351bp) protein (117aa)
Mercuric transport protein Tax=Proteobacteria RepID=MERT_SERMA
merT; mercuric reductase
Mercuric transport protein MerT {ECO:0000313|EMBL:CEG51031.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas xanthomarina.;"
anamox1_curated_scaffold_1578_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3967..4401
DNA (435bp) protein (145aa)
Mercuric resistance operon regulatory protein Tax=Proteobacteria RepID=MERR_SERMA
merR; mercuric reductase
MerR family transcriptional regulator {ECO:0000313|EMBL:EZE21857.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O123:H11 str. 2009C-3307.;"
anamox1_curated_scaffold_1578_8
unknown

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4546..5388
DNA (843bp) protein (281aa)

This feature has no annotations

anamox1_curated_scaffold_1578_9
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5433..7901)
DNA (2469bp) protein (823aa)
hypothetical protein Tax=Blastomonas sp. AAP53 RepID=UPI00035FFF8B
ScaffoldA29, whole genome shotgun sequence {ECO:0000313|EMBL:KIS29392.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
TonB-dependent receptor
anamox1_curated_scaffold_1578_10
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7902..10178)
DNA (2277bp) protein (759aa)
Adenylate cyclase {ECO:0000313|EMBL:EGV17646.1}; EC=4.6.1.1 {ECO:0000313|EMBL:EGV17646.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
Adenylate cyclase Tax=Thiocapsa marina 5811 RepID=F9UE89_9GAMM
transcriptional regulator domain-containing protein
anamox1_curated_scaffold_1578_11
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10412..12385
DNA (1974bp) protein (658aa)
Na-Ca exchanger/integrin-beta4 Tax=Beggiatoa sp. PS RepID=A7BUI9_9GAMM
Na-Ca exchanger/integrin-beta4 {ECO:0000313|EMBL:EDN69795.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
Na-Ca exchanger/integrin-beta4
anamox1_curated_scaffold_1578_12
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

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comp(12270..14876)
DNA (2607bp) protein (869aa)
TPR repeat-containing serine/threonin protein kinase; K08282 non-specific serine/threonine protein kinase [EC:2.7.11.1] bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonin protein kinase
Tax=RBG_13_Aminicenantes_59_9_curated
anamox1_curated_scaffold_1578_13
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(14873..15439)
DNA (567bp) protein (189aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSA5_OPITP
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACB75704.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
anamox1_curated_scaffold_1578_14
Pseudomonas mandelii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15533..16489
DNA (957bp) protein (319aa)
Uncharacterized protein Tax=Pseudomonas sp. GM33 RepID=J3FSM3_9PSED
Uncharacterized protein {ECO:0000313|EMBL:KDD66602.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mandelii PD30.;"
hypothetical protein
anamox1_curated_scaffold_1578_15
unknown

Not on your lists

16492..16590
DNA (99bp) protein (33aa)

This feature has no annotations

anamox1_curated_scaffold_1578_16
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16602..18104
DNA (1503bp) protein (501aa)
Cysteine synthase {ECO:0000313|EMBL:KEA64979.1}; EC=2.5.1.47 {ECO:0000313|EMBL:KEA64979.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
cysteine synthase Tax=Marinobacterium rhizophilum RepID=UPI00037D147C
O-acetylserine lyase
anamox1_curated_scaffold_1578_17
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18130..18429
DNA (300bp) protein (100aa)
Uncharacterized protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BYJ1_NITHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE15979.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
anamox1_curated_scaffold_1578_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

18553..18738
DNA (186bp) protein (62aa)
pyridoxal-dependent decarboxylase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pyridoxal-dependent decarboxylase
Tax=RBG_16_RIF_WS3X_71_46_curated
anamox1_curated_scaffold_1578_19
unknown

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comp(18866..19006)
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying 19 items

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