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anamox1_curated_scaffold_1309

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_1309_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..229
DNA (228bp) protein (76aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE90_9GAMM
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EIL97781.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
anamox1_curated_scaffold_1309_2
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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246..1592
DNA (1347bp) protein (449aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Signal transduction histidine kinase Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YGM8_THIV6
signal transduction histidine kinase
anamox1_curated_scaffold_1309_3
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1619..2977
DNA (1359bp) protein (453aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LHN9_HALO1
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:KFL35597.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
anamox1_curated_scaffold_1309_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2985..4460)
DNA (1476bp) protein (492aa)
Transcriptional regulator, XRE family Tax=Shewanella baltica (strain OS185) RepID=A6WUB9_SHEB8
XRE family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
anamox1_curated_scaffold_1309_5
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4601..6130
DNA (1530bp) protein (510aa)
malate synthase A (EC:2.3.3.9)
Malate synthase {ECO:0000256|RuleBase:RU000555}; EC=2.3.3.9 {ECO:0000256|RuleBase:RU000555};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC; 27009 / DSM 446 / JCM 5260 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 /; 104-1A) (Bacillus acidocaldarius).;"
Malate synthase Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WT20_ALIAD
anamox1_curated_scaffold_1309_6
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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6168..7451
DNA (1284bp) protein (428aa)
isocitrate lyase Tax=Xanthomonas sacchari RepID=UPI00026300D7
isocitrate lyase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
anamox1_curated_scaffold_1309_7
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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7511..8842
DNA (1332bp) protein (444aa)
Isocitrate dehydrogenase [NADP] Tax=gamma proteobacterium HTCC5015 RepID=B5JWU3_9GAMM
isocitrate dehydrogenase, NADP-dependent
Tax=RBG_16_Gamma2_60_9_curated
anamox1_curated_scaffold_1309_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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8832..9512
DNA (681bp) protein (227aa)
Uracil-DNA glycosylase Tax=Thiorhodovibrio sp. 970 RepID=H8Z7I3_9GAMM
Uracil-DNA glycosylase, family 5
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
anamox1_curated_scaffold_1309_9
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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9514..11331
DNA (1818bp) protein (606aa)
excinuclease ABC subunit C Tax=Thioalkalivibrio sp. ALJ6 RepID=UPI00037499E9
excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
anamox1_curated_scaffold_1309_10
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

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11343..11933
DNA (591bp) protein (197aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000375AB3B
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
anamox1_curated_scaffold_1309_trna_1
unknown

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12008..12080
DNA (73bp)
transferRNA Gly
anamox1_curated_scaffold_1309_trna_2
unknown

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12129..12199
DNA (71bp)
transferRNA Cys
anamox1_curated_scaffold_1309_11
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12238..12792
DNA (555bp) protein (185aa)
glutathione peroxidase (EC:1.11.1.9)
hypothetical protein Tax=Duganella zoogloeoides RepID=UPI00037FD598
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
anamox1_curated_scaffold_1309_12
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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13363..14007
DNA (645bp) protein (215aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
Heme ABC exporter, ATP-binding protein CcmA Tax=Thioflavicoccus mobilis 8321 RepID=L0GWE8_9GAMM
heme ABC transporter ATP-binding protein CcmA
anamox1_curated_scaffold_1309_13

Not on your lists

14004..14684
DNA (681bp) protein (227aa)
Heme exporter protein B Tax=Beggiatoa sp. PS RepID=A7BZI4_9GAMM
Marine sediment metagenome DNA, contig: S06H3_S08461 {ECO:0000313|EMBL:GAI26255.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cytochrome c-type biogenesis protein CcmB
anamox1_curated_scaffold_1309_14
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14687..15424
DNA (738bp) protein (246aa)
Heme exporter protein CcmC Tax=Methylomicrobium album BG8 RepID=H8GGP2_METAL
heme exporter protein CcmC
Tax=BJP_IG2158_Methylococcales_50_91
anamox1_curated_scaffold_1309_15

Not on your lists

15421..15585
DNA (165bp) protein (55aa)
Cytochrome C biogenesis protein CcmD Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WP86_9GAMM
Marine sediment metagenome DNA, contig: S06H3_S06848 {ECO:0000313|EMBL:GAI22904.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hemagglutination activity protein
anamox1_curated_scaffold_1309_16

Not on your lists

15582..16034
DNA (453bp) protein (151aa)
Cytochrome c-type biogenesis protein CcmE Tax=Nitrococcus mobilis Nb-231 RepID=A4BUK9_9GAMM
Marine sediment metagenome DNA, contig: S06H3_S06848 {ECO:0000313|EMBL:GAI22902.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ccmE; Cytochrome c-type biogenesis protein ccmE
anamox1_curated_scaffold_1309_17
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16031..18007
DNA (1977bp) protein (659aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI000379FA4F
ccmF; cytochrome c-type biogenesis protein CcmF
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
anamox1_curated_scaffold_1309_18

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18004..18540
DNA (537bp) protein (179aa)
Periplasmic protein thiol/disulfide oxidoreductase DsbE Tax=mine drainage metagenome RepID=T0ZTV3_9ZZZZ
Periplasmic protein thiol/disulfide oxidoreductase DsbE {ECO:0000313|EMBL:EQD33300.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
periplasmic protein thiol:disulfide oxidoreductase DsbE
anamox1_curated_scaffold_1309_19
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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18553..19020
DNA (468bp) protein (156aa)
cytochrome C biogenesis protein ccmh, partial Tax=Xanthomonas sacchari RepID=UPI00026300EE
cytochrome C biogenesis protein
Cytochrome C biogenesis protein {ECO:0000313|EMBL:AJC48121.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
anamox1_curated_scaffold_1309_20

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19017..20039
DNA (1023bp) protein (341aa)
hypothetical protein Tax=Nevskia ramosa RepID=UPI0003B53DF1
Formate-dependent nitrite reductase complex subunit NrfG {ECO:0000313|EMBL:EQD43946.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
anamox1_curated_scaffold_1309_21
unknown

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comp(20063..20575)
DNA (513bp) protein (171aa)

This feature has no annotations

anamox1_curated_scaffold_1309_22
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20583..21542)
DNA (960bp) protein (320aa)
Uncharacterized protein Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RLK8_ACCPU
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Displaying 24 items

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