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anamox1_curated_scaffold_3121

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_3121_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..316
DNA (315bp) protein (105aa)
hisD; histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
bifunctional histidinal dehydrogenase/ histidinol dehydrogenase Tax=Dyella japonica RepID=UPI0002D63CE2
anamox1_curated_scaffold_3121_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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313..1374
DNA (1062bp) protein (354aa)
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
histidinol-phosphate aminotransferase Tax=Dyella ginsengisoli RepID=UPI000347EC31
anamox1_curated_scaffold_3121_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1371..2459
DNA (1089bp) protein (363aa)
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazole glycerol-phosphate dehydratase/histidinol phosphatase Tax=Rhodanobacter spathiphylli B39 RepID=I4W691_9GAMM
Histidine biosynthesis bifunctional protein HisB {ECO:0000256|SAAS:SAAS00082593}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
anamox1_curated_scaffold_3121_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2476..3072
DNA (597bp) protein (199aa)
hisH; imidazole glycerol phosphate synthase (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Imidazole glycerol phosphate synthase subunit HisH bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
anamox1_curated_scaffold_3121_5
Idiomarina sp. MCCC 1A10513, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3072..3848
DNA (777bp) protein (259aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.;" source="Idiomarina sp. MCCC 1A10513.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Tax=Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) RepID=E1SRG1_FERBD
anamox1_curated_scaffold_3121_6

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3854..4564
DNA (711bp) protein (237aa)
imidazole glycerol phosphate synthase subunit hisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF (Fragment) Tax=mine drainage metagenome RepID=T0ZDY0_9ZZZZ
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000313|EMBL:EQD43213.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
anamox1_curated_scaffold_3121_7
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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4561..5205
DNA (645bp) protein (215aa)
hypothetical protein Tax=Woodsholea maritima RepID=UPI00037B06DC
bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
anamox1_curated_scaffold_3121_8
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(5210..7792)
DNA (2583bp) protein (861aa)
aspartate kinase (EC:4.1.1.20 2.7.2.4)
Aspartate kinase {ECO:0000313|EMBL:AEN73059.1}; EC=2.7.2.4 {ECO:0000313|EMBL:AEN73059.1};; EC=4.1.1.20 {ECO:0000313|EMBL:AEN73059.1};; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
Aspartate kinase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SIY4_RHOMR
anamox1_curated_scaffold_3121_9
unknown

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comp(7917..8132)
DNA (216bp) protein (72aa)

This feature has no annotations

anamox1_curated_scaffold_3121_10
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8221..9063)
DNA (843bp) protein (281aa)
Protein containing DUF62 (Fragment) Tax=mine drainage metagenome RepID=T0ZUX2_9ZZZZ
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
anamox1_curated_scaffold_3121_11
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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comp(9162..10790)
DNA (1629bp) protein (543aa)
Immunoglobulin V-set domain protein bin=GWF2_Lentisphaerae_57_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
Tax=GWF2_Lentisphaerae_57_35_curated
anamox1_curated_scaffold_3121_12
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10763..11611)
DNA (849bp) protein (283aa)
LigC protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FTN4_STIAD
LigC protein
LigC {ECO:0000313|EMBL:EAU69378.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
anamox1_curated_scaffold_3121_13
GWC1_Azotobacter_66_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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11862..12809
DNA (948bp) protein (316aa)
UspA domain protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BYH9_NITHN
UspA domain-containing protein
Tax=GWC1_Azotobacter_66_9_curated
anamox1_curated_scaffold_3121_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

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12833..14398
DNA (1566bp) protein (522aa)
hypothetical protein Tax=Variovorax paradoxus RepID=UPI00037B5939
aminoglycoside phosphotransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
anamox1_curated_scaffold_3121_15

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14448..14909
DNA (462bp) protein (154aa)
Signal-transduction protein with CBS domain protein Tax=mine drainage metagenome RepID=T1BYP7_9ZZZZ
Signal-transduction protein with CBS domain protein {ECO:0000313|EMBL:EQD59065.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
signal transduction protein with CBS domains
anamox1_curated_scaffold_3121_16
Serpens flexibilis, Serpens, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14924..16480)
DNA (1557bp) protein (519aa)
molecular chaperone GroEL Tax=Bradyrhizobium elkanii RepID=UPI0003807382
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Serpens.;" source="Serpens flexibilis.;"
groEL; molecular chaperone GroEL
Displaying 16 items

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