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anamox1_curated_scaffold_2021

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_2021_1
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1200)
DNA (1200bp) protein (400aa)
secretion protein HlyD Tax=Sphingomonas sp. KC8 RepID=UPI0002488550
Uncharacterized protein {ECO:0000313|EMBL:AHE53862.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
RND family efflux transporter MFP subunit
anamox1_curated_scaffold_2021_2
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1197..2504)
DNA (1308bp) protein (436aa)
RND efflux system outer membrane lipoprotein Tax=Sphingomonas sp. MM-1 RepID=M4RX11_9SPHN
RND efflux system outer membrane lipoprotein
RND efflux system outer membrane lipoprotein {ECO:0000313|EMBL:AGH48081.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
anamox1_curated_scaffold_2021_3
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

2794..3441
DNA (648bp) protein (216aa)
Uncharacterized protein Tax=Candidatus Microthrix RepID=R4YW32_9ACTN
Thioesterase superfamily protein {ECO:0000313|EMBL:KJF17006.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
hypothetical protein
anamox1_curated_scaffold_2021_4
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3511..5157)
DNA (1647bp) protein (549aa)
60 kDa chaperonin Tax=Beggiatoa alba B18LD RepID=I3CC57_9GAMM
groEL; chaperonin GroEL
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
anamox1_curated_scaffold_2021_5

Not on your lists

comp(5161..5454)
DNA (294bp) protein (98aa)
Chaperonin Cpn10 Tax=mine drainage metagenome RepID=T1CTD4_9ZZZZ
Chaperonin Cpn10 {ECO:0000313|EMBL:EQD72680.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
molecular chaperone GroES
anamox1_curated_scaffold_2021_6

Not on your lists

5679..6041
DNA (363bp) protein (121aa)
Divalent ion tolerance protein, CutA1 Tax=mine drainage metagenome RepID=T0YGP1_9ZZZZ
Divalent ion tolerance protein, CutA1 {ECO:0000313|EMBL:EQD32268.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
CutA1 divalent ion tolerance protein
anamox1_curated_scaffold_2021_7
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6051..7871
DNA (1821bp) protein (607aa)
Thiol:disulfide interchange protein DsbD {ECO:0000256|HAMAP-Rule:MF_00399}; EC=1.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00399};; Protein-disulfide reductase {ECO:0000256|HAMAP-Rule:MF_00399}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
Thiol:disulfide interchange protein DsbD Tax=Hydrocarboniphaga effusa AP103 RepID=I8I3H1_9GAMM
DsbD family thiol:disulfide interchange protein
anamox1_curated_scaffold_2021_8
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7872..8621
DNA (750bp) protein (250aa)
hypothetical protein Tax=Methylobacter marinus RepID=UPI000376F259
thioredoxin
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
anamox1_curated_scaffold_2021_9
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8689..9135
DNA (447bp) protein (149aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase Tax=Nevskia ramosa RepID=UPI0003B3758C
anamox1_curated_scaffold_2021_10

Not on your lists

9155..9619
DNA (465bp) protein (155aa)
Acetyl-CoA biotin carboxyl carrier {ECO:0000313|EMBL:EQD52386.1}; EC=6.4.1.2 {ECO:0000313|EMBL:EQD52386.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
acetyl-CoA carboxylase biotin carboxyl carrier protein (EC:6.4.1.2)
Acetyl-CoA biotin carboxyl carrier Tax=mine drainage metagenome RepID=T0ZVW2_9ZZZZ
anamox1_curated_scaffold_2021_11
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9629..10972
DNA (1344bp) protein (448aa)
Acetyl-CoA carboxylase, biotin carboxylase Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C1Z6_NITHN
acetyl-CoA carboxylase, biotin carboxylase
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:ADE16584.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
anamox1_curated_scaffold_2021_12
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10993..11910
DNA (918bp) protein (306aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
prmA; ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3A7_9GAMM
anamox1_curated_scaffold_2021_13
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11880..12911
DNA (1032bp) protein (344aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000375C512
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_57_12_curated
anamox1_curated_scaffold_2021_14
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12908..13918
DNA (1011bp) protein (337aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BAY1663.;"
tRNA-dihydrouridine synthase B Tax=Pseudomonas pelagia RepID=UPI00039B4E8C
nifR3 family TIM-barrel protein
anamox1_curated_scaffold_2021_15

Not on your lists

13955..14245
DNA (291bp) protein (97aa)
DNA-binding protein Fis Tax=mine drainage metagenome RepID=T0Z963_9ZZZZ
DNA-binding protein Fis {ECO:0000313|EMBL:EQD40592.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA-binding protein fis
anamox1_curated_scaffold_2021_16
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14275..15345
DNA (1071bp) protein (357aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:3.5.4.10)
Bifunctional purine biosynthesis protein PurH; Includes:; Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3;; AICAR transformylase; Includes:; IMP cyclohydrolase; EC=3.5.4.10;; ATIC; IMP synthase; Inosinicase; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
Bifunctional purine biosynthesis protein PurH Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=PUR9_ALLVD
anamox1_curated_scaffold_2021_17
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15285..15788
DNA (504bp) protein (168aa)
Bifunctional purine biosynthesis protein PurH Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q607L2_METCA
purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
anamox1_curated_scaffold_2021_18
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15805..17091
DNA (1287bp) protein (429aa)
phosphoribosylamine/glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase; EC=6.3.4.13;; GARS; Glycinamide ribonucleotide synthetase; Phosphoribosylglycinamide synthetase; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
Phosphoribosylamine--glycine ligase Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=PUR2_ALLVD
anamox1_curated_scaffold_2021_19
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17101..17997)
DNA (897bp) protein (299aa)
Uncharacterized protein Tax=Sphingobium sp. AP49 RepID=J2CUB7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJK80729.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein
Displaying 19 items

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