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anamox1_curated_scaffold_2423

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_2423_1
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..643)
DNA (642bp) protein (214aa)
Triose-phosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
Triosephosphate isomerase Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GNY3_THISH
anamox1_curated_scaffold_2423_2
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(722..2056)
DNA (1335bp) protein (445aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase Tax=Methylomicrobium album BG8 RepID=H8GR68_METAL
anamox1_curated_scaffold_2423_3
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2060..2887)
DNA (828bp) protein (276aa)
folP; dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase Tax=Pseudomonas mendocina (strain ymp) RepID=A4XYE6_PSEMY
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
anamox1_curated_scaffold_2423_4
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2908..4842)
DNA (1935bp) protein (645aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
ATP-dependent zinc metalloprotease FtsH Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E6S2_9GAMM
Cell division protein FtsH
anamox1_curated_scaffold_2423_5

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comp(4892..5518)
DNA (627bp) protein (209aa)
23S ribosomal RNA methyltransferase {ECO:0000313|EMBL:EQD59254.1}; EC=2.1.1.- {ECO:0000313|EMBL:EQD59254.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rlmE; Ribosomal RNA large subunit methyltransferase E (EC:2.1.1.166)
23S ribosomal RNA methyltransferase Tax=mine drainage metagenome RepID=T1C1U0_9ZZZZ
anamox1_curated_scaffold_2423_6

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5581..5880
DNA (300bp) protein (100aa)
RNA-binding, CRM domain protein (Fragment) Tax=mine drainage metagenome RepID=T1BZ72_9ZZZZ
RNA-binding, CRM domain protein {ECO:0000313|EMBL:EQD59255.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RNA-binding protein YhbY
anamox1_curated_scaffold_2423_7
Spiribacter salinus, Spiribacter, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5877..6356)
DNA (480bp) protein (160aa)
Transcription elongation factor GreA Tax=Spiribacter salinus M19-40 RepID=R4VEL0_9GAMM
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Spiribacter.;" source="Spiribacter salinus M19-40.;"
anamox1_curated_scaffold_2423_8
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6353..9577)
DNA (3225bp) protein (1075aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
Carbamoyl-phosphate synthase large chain Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A764_ALKEH
carbamoyl-phosphate synthase large subunit
anamox1_curated_scaffold_2423_9
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9588..10763)
DNA (1176bp) protein (392aa)
carA; carbamoyl phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
Carbamoyl-phosphate synthase small chain Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q607A8_METCA
anamox1_curated_scaffold_2423_10
CG_Proteo_01, Proteobacteria, Bacteria

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comp(11014..11811)
DNA (798bp) protein (266aa)
4-hydroxy-tetrahydrodipicolinate reductase Tax=alpha proteobacterium BAL199 RepID=A8U063_9PROT
dihydrodipicolinate reductase
Tax=CG_Proteo_01
anamox1_curated_scaffold_2423_11
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11808..12947)
DNA (1140bp) protein (380aa)
Chaperone protein DnaJ Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U3AXJ7_PSEAC
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
chaperone protein DnaJ
anamox1_curated_scaffold_2423_12
unknown

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comp(13004..13111)
DNA (108bp) protein (36aa)

This feature has no annotations

Displaying 12 items

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