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anamox1_curated_scaffold_403

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_403_1
unknown

Not on your lists

comp(2..136)
DNA (135bp) protein (45aa)

This feature has no annotations

anamox1_curated_scaffold_403_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(150..2216)
DNA (2067bp) protein (689aa)
Methyl-accepting chemotaxis sensory transducer Tax=mine drainage metagenome RepID=T1BTU9_9ZZZZ
Chemotaxis protein {ECO:0000313|EMBL:GAN45285.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
methyl-accepting chemotaxis sensory transducer
anamox1_curated_scaffold_403_3

Not on your lists

comp(2203..2766)
DNA (564bp) protein (188aa)
Twitching motility protein PilI Tax=mine drainage metagenome RepID=T0Y7U3_9ZZZZ
Twitching motility protein PilI {ECO:0000313|EMBL:EQD31196.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
twitching motility protein PilI
anamox1_curated_scaffold_403_4

Not on your lists

comp(2769..3134)
DNA (366bp) protein (122aa)
Type IV pilus response regulator Pilh (Fragment) Tax=mine drainage metagenome RepID=T1C9P3_9ZZZZ
Type IV pilus response regulator Pilh {ECO:0000313|EMBL:EQD78932.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
response regulator receiver protein
anamox1_curated_scaffold_403_5

Not on your lists

comp(3140..3532)
DNA (393bp) protein (131aa)
Type IV pilus response regulator PilG (Fragment) Tax=mine drainage metagenome RepID=T1BX54_9ZZZZ
Type IV pilus response regulator PilG {ECO:0000313|EMBL:EQD58450.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
response regulator receiver protein
anamox1_curated_scaffold_403_6
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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3696..4676
DNA (981bp) protein (327aa)
Glutathione synthetase Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G1W9_9GAMM
glutathione synthetase
Tax=BJP_IG2102_Gammaproteobacteria_62_140
anamox1_curated_scaffold_403_7
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4732..5616
DNA (885bp) protein (295aa)
cell envelope biogenesis protein TonB Tax=Pseudomonas sp. 313 RepID=UPI0003805F90
TonB family protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
anamox1_curated_scaffold_403_8

Not on your lists

5649..6209
DNA (561bp) protein (187aa)
Protein containing DUF179 Tax=mine drainage metagenome RepID=T0ZRF7_9ZZZZ
Protein containing DUF179 {ECO:0000313|EMBL:EQD32415.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
anamox1_curated_scaffold_403_9

Not on your lists

6202..6657
DNA (456bp) protein (152aa)
Resolvase, holliday junction-type, YqgF-like protein {ECO:0000313|EMBL:EQD32414.1}; EC=3.1.-.- {ECO:0000313|EMBL:EQD32414.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Resolvase, holliday junction-type, YqgF-like protein Tax=mine drainage metagenome RepID=T0ZUQ3_9ZZZZ
Holliday junction resolvase YqgF
anamox1_curated_scaffold_403_10
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6654..7613
DNA (960bp) protein (320aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2)
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
anamox1_curated_scaffold_403_11
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7610..8494
DNA (885bp) protein (295aa)
TonB box domain protein Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GP68_THISH
TonB box domain-containing protein
TonB box domain protein {ECO:0000313|EMBL:ACL73988.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
anamox1_curated_scaffold_403_12
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8501..9589)
DNA (1089bp) protein (363aa)
Twitching motility protein Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RMV1_ALLVD
twitching motility protein
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
anamox1_curated_scaffold_403_13

Not on your lists

comp(9643..10800)
DNA (1158bp) protein (386aa)
Twitching motility protein PilU (Fragment) Tax=mine drainage metagenome RepID=T1BF02_9ZZZZ
Twitching motility protein PilU {ECO:0000313|EMBL:EQD68407.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
pilus retraction protein PilT
anamox1_curated_scaffold_403_14
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10822..11862)
DNA (1041bp) protein (347aa)
Pilus retraction ATPase PilT Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YDX2_THIV6
pilus retraction ATPase PilT
Pilus retraction ATPase PilT {ECO:0000313|EMBL:AFL75190.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
anamox1_curated_scaffold_403_15

Not on your lists

11945..12640
DNA (696bp) protein (232aa)
Putative pyridoxal phosphate-dependent enzyme Tax=mine drainage metagenome RepID=T1B6A5_9ZZZZ
Putative pyridoxal phosphate-dependent enzyme {ECO:0000313|EMBL:EQD68431.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
YggS-like
anamox1_curated_scaffold_403_16
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12637..13500
DNA (864bp) protein (288aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E1X7_9GAMM
anamox1_curated_scaffold_403_17

Not on your lists

13497..14024
DNA (528bp) protein (176aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1CKZ7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD68434.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
anamox1_curated_scaffold_403_18
RLO_PLX_64_10, Bacteria

Not on your lists

14029..14340
DNA (312bp) protein (104aa)
UPF0235 protein Adeh_1087 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Y1087_ANADE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
anamox1_curated_scaffold_403_19

Not on your lists

14493..14807
DNA (315bp) protein (105aa)
DNA-binding protein HU Tax=mine drainage metagenome RepID=T1BF49_9ZZZZ
DNA-binding protein HU {ECO:0000313|EMBL:EQD68442.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
histone family protein DNA-binding protein
anamox1_curated_scaffold_403_20
Kangiella geojedonensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14870..15493)
DNA (624bp) protein (208aa)
Uncharacterized protein Tax=Rickettsiella grylli RepID=A8PLP7_9COXI
Alpha/beta family hydrolase {ECO:0000313|EMBL:AKE52670.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella geojedonensis.;"
putative hydrolase of the alpha/beta superfamily
anamox1_curated_scaffold_403_21
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15490..15726)
DNA (237bp) protein (79aa)
peptidylprolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
Peptidyl-prolyl cis-trans isomerase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTJ4_SIDLE
anamox1_curated_scaffold_403_22
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15726..17618)
DNA (1893bp) protein (631aa)
Chaperone protein HtpG Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TMX3_STEMA
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
htpG; heat shock protein 90
anamox1_curated_scaffold_403_23
unknown

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comp(17715..17831)
DNA (117bp) protein (39aa)

This feature has no annotations

anamox1_curated_scaffold_403_24
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17863..18687
DNA (825bp) protein (275aa)
hypothetical protein Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000378B4CC
cobyrinic acid ac-diamide synthase
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ACL71288.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
anamox1_curated_scaffold_403_25
unknown

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comp(18692..18904)
DNA (213bp) protein (71aa)

This feature has no annotations

anamox1_curated_scaffold_403_26
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18999..20384)
DNA (1386bp) protein (462aa)
LOG family protein ygdH Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI0003619444
lysine decarboxylase
Tax=RBG_16_Gammaproteobacteria_57_12_curated
anamox1_curated_scaffold_403_27

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comp(20411..20932)
DNA (522bp) protein (174aa)
ErfK/YbiS/YcfS/YnhG family protein (Fragment) Tax=mine drainage metagenome RepID=T1CH59_9ZZZZ
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:EQD66520.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
anamox1_curated_scaffold_403_28
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21047..23221)
DNA (2175bp) protein (725aa)
Lytic transglycosylase catalytic Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BVC9_NITHN
lytic transglycosylase
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ADE13557.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
anamox1_curated_scaffold_403_29

Not on your lists

comp(23687..24427)
DNA (741bp) protein (247aa)
Ribonucleotide reductase, alpha subunit (Fragment) Tax=mine drainage metagenome RepID=T1ATD4_9ZZZZ
Ribonucleotide reductase, alpha subunit {ECO:0000313|EMBL:EQD45280.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
NrdJb
anamox1_curated_scaffold_403_30
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(24445..26592)
DNA (2148bp) protein (716aa)
ribonucleotide reductase Tax=Dyella ginsengisoli RepID=UPI00037CF6CA
NrdJa
Tax=BJP_08E140C01_Xanthomonadales_64_42
Displaying items 1-30 of 58 in total

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