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anamox2_curated_scaffold_2278

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox2_curated_scaffold_2278_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..524)
DNA (522bp) protein (174aa)
DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
DNA-directed RNA polymerase subunit alpha Tax=Rudaea cellulosilytica RepID=UPI0003710C20
anamox2_curated_scaffold_2278_2
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(601..1233)
DNA (633bp) protein (211aa)
30S ribosomal protein S4 Tax=Rudaea cellulosilytica RepID=UPI000382A6C7
rpsD; 30S ribosomal protein S4
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
anamox2_curated_scaffold_2278_3
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1237..1629)
DNA (393bp) protein (131aa)
30S ribosomal protein S11 Tax=Rudaea cellulosilytica RepID=UPI000376842D
30S ribosomal protein S11
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
anamox2_curated_scaffold_2278_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1666..2022)
DNA (357bp) protein (119aa)
30S ribosomal protein S13 Tax=Rudaea cellulosilytica RepID=UPI0003759CFF
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
30S ribosomal protein S13
anamox2_curated_scaffold_2278_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2137..3447)
DNA (1311bp) protein (437aa)
Protein translocase subunit SecY Tax=Rhodanobacter fulvus Jip2 RepID=I4VM91_9GAMM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
secY; preprotein translocase subunit SecY
anamox2_curated_scaffold_2278_6
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3451..3885)
DNA (435bp) protein (145aa)
50S ribosomal protein L15 Tax=Rudaea cellulosilytica RepID=UPI000364F998
50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
anamox2_curated_scaffold_2278_7
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3915..4121)
DNA (207bp) protein (69aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI000368655D
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
50S ribosomal protein L30
anamox2_curated_scaffold_2278_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4114..4629)
DNA (516bp) protein (172aa)
30S ribosomal protein S5 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM88_9GAMM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
30S ribosomal protein S5
anamox2_curated_scaffold_2278_9
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4751..5104)
DNA (354bp) protein (118aa)
50S ribosomal protein L18 Tax=Dyella japonica RepID=UPI000315AEAA
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
50S ribosomal protein L18
anamox2_curated_scaffold_2278_10
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5186..5713)
DNA (528bp) protein (176aa)
50S ribosomal protein L6 Tax=Rudaea cellulosilytica RepID=UPI00035CF68E
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
LSU ribosomal protein L6P
anamox2_curated_scaffold_2278_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5734..6129)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 Tax=Rhodanobacter sp. 115 RepID=I4WNK2_9GAMM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
30S ribosomal protein S8
anamox2_curated_scaffold_2278_12
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6182..6487)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Stenotrophomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
30S ribosomal protein S14
Tax=GWF1_Xanthomonadales_69_6_curated
anamox2_curated_scaffold_2278_13
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6503..7042)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
50S ribosomal protein L5 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
rplE; 50S ribosomal protein L5
anamox2_curated_scaffold_2278_14

Not on your lists


comp(7054..7368)
DNA (315bp) protein (105aa)
Ribosomal protein L24 Tax=mine drainage metagenome RepID=T1CLV2_9ZZZZ
Ribosomal protein L24 {ECO:0000313|EMBL:EQD69805.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rplX; 50S ribosomal protein L24
anamox2_curated_scaffold_2278_15

Not on your lists


comp(7380..7748)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 Tax=Rudaea cellulosilytica RepID=UPI000379B6BB
Ribosomal protein L14, bacterial-type {ECO:0000313|EMBL:EQD67230.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L14
anamox2_curated_scaffold_2278_16
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7774..8037)
DNA (264bp) protein (88aa)
30S ribosomal protein S17 Tax=Rudaea cellulosilytica RepID=UPI00035F86CD
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
rpsQ; 30S ribosomal protein S17
anamox2_curated_scaffold_2278_17
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8039..8233)
DNA (195bp) protein (65aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI000381F043
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
LSU ribosomal protein L29P
anamox2_curated_scaffold_2278_18
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8233..8646)
DNA (414bp) protein (138aa)
50S ribosomal protein L16 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYL0_FRAAD
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
50S ribosomal protein L16
anamox2_curated_scaffold_2278_19
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8650..9357)
DNA (708bp) protein (236aa)
30S ribosomal protein S3 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVG4_PSEUU
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
30S ribosomal protein S3
anamox2_curated_scaffold_2278_20
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9372..9701)
DNA (330bp) protein (110aa)
50S ribosomal protein L22 Tax=Dyella ginsengisoli RepID=UPI00034AB9BD
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
50S ribosomal protein L22
anamox2_curated_scaffold_2278_21
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9713..9991)
DNA (279bp) protein (93aa)
30S ribosomal protein S19 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URZ7_PSEUP
rpsS; 30S ribosomal protein S19
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
anamox2_curated_scaffold_2278_22
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9995..10822)
DNA (828bp) protein (276aa)
50S ribosomal protein L2 Tax=Rudaea cellulosilytica RepID=UPI000360E4AE
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
50S ribosomal protein L2
anamox2_curated_scaffold_2278_23
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10874..11164)
DNA (291bp) protein (97aa)
50S ribosomal protein L23 Tax=Stenotrophomonas RepID=RL23_STRM5
rplW; 50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
anamox2_curated_scaffold_2278_24
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11161..11523)
DNA (363bp) protein (121aa)
50S ribosomal protein L4 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYK4_FRAAD
50S ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
anamox2_curated_scaffold_2278_25
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11776..12420)
DNA (645bp) protein (215aa)
50S ribosomal protein L3 Tax=Dyella ginsengisoli RepID=UPI000346A7D6
50S ribosomal protein L3
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
anamox2_curated_scaffold_2278_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12432..12743)
DNA (312bp) protein (104aa)
30S ribosomal protein S10 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYK2_FRAAD
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
anamox2_curated_scaffold_2278_27
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13162..13812)
DNA (651bp) protein (217aa)
elongation factor Tu Tax=Arenimonas oryziterrae RepID=UPI0003B61D83
Elongation factor Tu {ECO:0000256|RuleBase:RU004061}; Flags: Fragment;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
translation elongation factor TU
Displaying 27 items

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