ggKbase | organisms

Consensus taxonomy: Planctomycetia → Planctomycetes → Bacteria

Metagenomic Context

Parent: anamox1_Planctomycetia_64_8 Manually curated genome
Original version: anamox1_Planctomycetia_64_8

Properties

Avg. coverage: 1.00 Longest contig: 35.63 Kbp Bin length: 4.14 Mbp GC content: 63.58 %

Contigs count: 783 Features count: 3420 rRNAs count: 0 tRNAs count: 20

Genome completeness

near complete RP 45 / 55 MC: 3 BSCG 43 / 51 MC: 2 ASCG 10 / 38 MC: 1

Displaying items 551-600 of 783 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
anamox1_curated_scaffold_45217 Species: Pirellula staleyi (50%)	2	1507 bp	62.11	1.00	65.69
anamox1_curated_scaffold_13736 Species: Anaeromyxobacter sp. Fw109-5 (50%)	2	3819 bp	67.01	1.00	95.37
anamox1_curated_scaffold_23026 Species: Singulisphaera acidiphila (50%)	2	2269 bp	57.56	1.00	55.40
anamox1_curated_scaffold_46943 Species: Singulisphaera acidiphila (50%)	2	1236 bp	62.54	1.00	86.41
anamox1_curated_scaffold_26755 Species: Rhodopirellula sallentina (50%)	2	1926 bp	65.42	1.00	92.99
anamox1_curated_scaffold_53209 Species: RBG_16_Planctomycetes_64_10_curated (50%)	2	2280 bp	63.73	1.00	59.74
anamox1_curated_scaffold_28869 Species: Pirellula staleyi (50%)	2	2335 bp	62.61	1.00	47.02
anamox1_curated_scaffold_15473 Species: Pirellula staleyi (50%)	2	3141 bp	65.90	1.00	50.43
anamox1_curated_scaffold_37846 Species: Rhodopirellula sp. SWK7 (50%)	2	1756 bp	56.89	1.00	57.57
anamox1_curated_scaffold_33877 Species: Blastopirellula marina (100%)	2	1985 bp	67.61	1.00	88.72
anamox1_curated_scaffold_40517 Species: RBG_16_Planctomycetes_64_12_curated (50%)	2	1594 bp	62.67	1.00	50.44
anamox1_curated_scaffold_18486 Species: RBG_13_Planctomycetes_63_9_curated (50%)	2	2539 bp	64.95	1.00	73.14
anamox1_curated_scaffold_18790 Species: Blastopirellula marina (50%)	2	2612 bp	63.90	1.00	79.94
anamox1_curated_scaffold_7970 Species: Thiocapsa marina (50%)	2	5288 bp	61.52	1.00	73.24
anamox1_curated_scaffold_52543 Species: Pirellula staleyi (50%)	2	1203 bp	63.34	1.00	77.56
anamox1_curated_scaffold_23448 Species: Pirellula staleyi (50%)	2	2364 bp	62.90	1.00	81.47
anamox1_curated_scaffold_29214 Species: Rhodopirellula baltica (50%)	2	1742 bp	56.26	1.00	45.64
anamox1_curated_scaffold_11991 Species: RBG_13_Planctomycetes_63_9_curated (50%)	2	3643 bp	61.52	1.00	82.60
anamox1_curated_scaffold_28538 Species: Pirellula staleyi (50%)	2	1609 bp	60.66	1.00	52.77
anamox1_curated_scaffold_32679 Species: Blastopirellula marina (50%)	2	1876 bp	64.29	1.00	78.52
anamox1_curated_scaffold_16783 Species: RBG_16_Planctomycetes_64_10_curated (50%)	2	3369 bp	61.74	1.00	70.35
anamox1_curated_scaffold_83331 Species: Rhodopirellula baltica (100%)	2	1366 bp	61.71	1.00	96.19
anamox1_curated_scaffold_24560 Species: Planctopirus limnophila (50%)	2	2058 bp	61.08	1.00	92.13
anamox1_curated_scaffold_12085 Species: RBG_13_Planctomycetes_63_9_curated (50%)	2	3601 bp	65.70	1.00	87.73
anamox1_curated_scaffold_24222 Species: RBG_13_Planctomycetes_63_9_curated (50%)	2	2586 bp	62.80	1.00	49.07
anamox1_curated_scaffold_28952 Species: Planctopirus limnophila (50%)	2	1634 bp	62.06	1.00	95.84
anamox1_curated_scaffold_33180 Species: Pirellula staleyi (100%)	2	1626 bp	62.73	1.00	68.82
anamox1_curated_scaffold_36982 Species: Pirellula staleyi (50%)	2	1855 bp	63.61	1.00	67.60
anamox1_curated_scaffold_40818 Species: RBG_16_Planctomycetes_64_12_curated (50%)	2	1412 bp	65.58	1.00	52.27
anamox1_curated_scaffold_31575 Species: Blastopirellula marina (50%)	2	1948 bp	56.57	1.00	61.60
anamox1_curated_scaffold_21341 Species: Pirellula staleyi (50%)	2	2010 bp	60.65	1.00	75.67
anamox1_curated_scaffold_21707 Species: Pirellula staleyi (100%)	2	2392 bp	65.89	1.00	88.17
anamox1_curated_scaffold_31171 Species: Gimesia maris (50%)	2	1676 bp	60.98	1.00	100.06
anamox1_curated_scaffold_24857 Species: RBG_16_Planctomycetes_64_10_curated (50%)	2	2190 bp	62.69	1.00	69.59
anamox1_curated_scaffold_23140 Species: RBG_19FT_COMBO_Chloroflexi_47_9_curated (50%)	2	2502 bp	64.51	1.00	65.71
anamox1_curated_scaffold_18444 Species: Pirellula staleyi (50%)	2	2976 bp	66.33	1.00	90.12
anamox1_curated_scaffold_30152 Species: RBG_16_Planctomycetes_64_12_curated (50%)	2	2076 bp	66.62	1.00	93.64
anamox1_curated_scaffold_18936 Species: RBG_16_Planctomycetes_64_10_curated (50%)	2	2557 bp	65.12	1.00	78.26
anamox1_curated_scaffold_36285 Species: Gimesia maris (50%)	2	1557 bp	64.93	1.00	83.04
anamox1_curated_scaffold_17991 Species: RBG_16_Planctomycetes_64_12_curated (50%)	2	2566 bp	60.76	1.00	74.12
anamox1_curated_scaffold_37110 Species: uncultured planctomycete (50%)	2	2024 bp	64.53	1.00	63.14
anamox1_curated_scaffold_21614 Species: Gimesia maris (50%)	2	2366 bp	67.62	1.00	99.66
anamox1_curated_scaffold_22491 Species: RBG_13_Planctomycetes_63_9_curated (50%)	2	2894 bp	62.23	1.00	61.99
anamox1_curated_scaffold_13741 Species: Pirellula staleyi (50%)	2	3630 bp	63.33	1.00	54.13
anamox1_curated_scaffold_34220 Species: Blastopirellula marina (100%)	2	1501 bp	65.02	1.00	80.15
anamox1_curated_scaffold_18281 Species: Pirellula staleyi (50%)	2	2481 bp	62.11	1.00	65.18
anamox1_curated_scaffold_17848 Species: marine sediment metagenome (50%)	2	2655 bp	61.39	1.00	77.74
anamox1_curated_scaffold_69622 Species: Singulisphaera acidiphila (50%)	2	1699 bp	60.27	1.00	77.52
anamox1_curated_scaffold_10881 Species: Rhodopirellula maiorica (50%)	2	4147 bp	60.91	1.00	65.83
anamox1_curated_scaffold_17881 Species: Pirellula staleyi (50%)	2	2745 bp	64.77	1.00	94.86

Displaying items 551-600 of 783 in total

anamox1_Planctomycetia_64_8_curated

anamox1_Planctomycetia_64_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

anamox1_Planctomycetia_64_8_curated

anamox1_Planctomycetia_64_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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