ggKbase home page

anamox1_curated_scaffold_908

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_908_1
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..468)
DNA (468bp) protein (156aa)
Uncharacterized protein Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W169_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EFK34084.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
ABC transporter permease
anamox1_curated_scaffold_908_2
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(497..1888)
DNA (1392bp) protein (464aa)
Putative outer membrane efflux protein Tax=Formosa sp. AK20 RepID=M7N7C3_9FLAO
Strain DSM 12611 Contig06, whole genome shotgun sequence {ECO:0000313|EMBL:KIO53537.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
transporter
anamox1_curated_scaffold_908_3
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1885..2340)
DNA (456bp) protein (152aa)
hypothetical protein Tax=Riemerella columbina RepID=UPI00037D673A
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EFK34086.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
transcriptional regulator
anamox1_curated_scaffold_908_4
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2627..4651)
DNA (2025bp) protein (675aa)
excinuclease ABC subunit B Tax=Segetibacter koreensis RepID=UPI00036E309B
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Excinuclease ABC subunit B
anamox1_curated_scaffold_908_5
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4745..4984)
DNA (240bp) protein (80aa)
Rhodanese-like domain-containing protein Tax=Flavobacterium limnosediminis JC2902 RepID=V6SRK6_9FLAO
Rhodanese-like domain-containing protein {ECO:0000313|EMBL:ESU29333.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
Rhodanese-like domain-containing protein
anamox1_curated_scaffold_908_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5130..5762
DNA (633bp) protein (211aa)
Uncharacterized protein family UPF0126 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDK0_NIAKG
hypothetical protein
Uncharacterized protein family UPF0126 {ECO:0000313|EMBL:AEW00450.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
anamox1_curated_scaffold_908_7
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5768..6895)
DNA (1128bp) protein (376aa)
Arginase/agmatinase/formiminoglutamase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIK8_NIAKG
Arginase {ECO:0000313|EMBL:KIC92170.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Arginase/agmatinase/formiminoglutamase
anamox1_curated_scaffold_908_8
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


6967..8040
DNA (1074bp) protein (358aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
phenylalanyl-tRNA synthetase subunit alpha Tax=Segetibacter koreensis RepID=UPI00035EBBA8
phenylalanyl-tRNA synthetase subunit alpha
anamox1_curated_scaffold_908_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8049..8891
DNA (843bp) protein (281aa)
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:AEW02859.1}; EC=1.1.1.157 {ECO:0000313|EMBL:AEW02859.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
3-hydroxybutyryl-CoA dehydrogenase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIK6_NIAKG
3-hydroxybutyryl-CoA dehydrogenase
anamox1_curated_scaffold_908_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

8904..9893
DNA (990bp) protein (330aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00037F6713
epimerase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
anamox1_curated_scaffold_908_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9911..10531)
DNA (621bp) protein (207aa)
Recombination protein RecR Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7I8_NIAKG
DNA replication and repair protein RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
anamox1_curated_scaffold_908_12
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10613..11629)
DNA (1017bp) protein (339aa)
Uncharacterized protein Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FX49_ECHVK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA77225.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
anamox1_curated_scaffold_908_13
Odoribacter splanchnicus CAG:14, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11634..14021)
DNA (2388bp) protein (796aa)
sugar transporter Tax=Thermophagus xiamenensis RepID=UPI000255CC2F
polysaccharide export protein
Polysaccharide export protein {ECO:0000313|EMBL:CDB06474.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental samples.;" source="Odoribacter splanchnicus CAG:14.;"
anamox1_curated_scaffold_908_14
Owenweeksia hongkongensis, Owenweeksia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14206..15171)
DNA (966bp) protein (322aa)
2-nitropropane dioxygenase-like enzyme Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R6L7_OWEHD
2-nitropropane dioxygenase
2-nitropropane dioxygenase-like enzyme {ECO:0000313|EMBL:AEV31160.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Owenweeksia.;" source="Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL; B-23963).;"
anamox1_curated_scaffold_908_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15184..16362)
DNA (1179bp) protein (393aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00035E634A
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AEW02716.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
anamox1_curated_scaffold_908_16
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16447..16896
DNA (450bp) protein (150aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00035FC455
MarR family transcriptional regulator {ECO:0000313|EMBL:KIC91124.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
MarR family transcriptional regulator
anamox1_curated_scaffold_908_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

16976..18763
DNA (1788bp) protein (596aa)
acyl-CoA dehydrogenase Tax=Segetibacter koreensis RepID=UPI0003728329
butyryl-CoA dehydrogenase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
anamox1_curated_scaffold_908_18
unknown

Not on your lists

18800..18925
DNA (126bp) protein (42aa)

This feature has no annotations

anamox1_curated_scaffold_908_19
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19225..19683
DNA (459bp) protein (153aa)
Sigma-70 region 2 domain protein Tax=Indibacter alkaliphilus LW1 RepID=S2DA31_9BACT
Sigma-70 region 2 domain protein {ECO:0000313|EMBL:EOZ96057.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" source="Indibacter alkaliphilus LW1.;"
sigma-70 family RNA polymerase sigma factor
anamox1_curated_scaffold_908_20
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19680..20420
DNA (741bp) protein (247aa)
Uncharacterized protein Tax=Mariniradius saccharolyticus AK6 RepID=M7XCZ8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EMS32754.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
hypothetical protein
anamox1_curated_scaffold_908_21
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

20427..23693
DNA (3267bp) protein (1089aa)
Uncharacterized protein Tax=Mariniradius saccharolyticus AK6 RepID=M7Y678_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EMS32746.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
hypothetical protein
anamox1_curated_scaffold_908_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23702..25519)
DNA (1818bp) protein (606aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
1-deoxy-D-xylulose-5-phosphate synthase Tax=Niabella soli DSM 19437 RepID=H1NN55_9SPHI
anamox1_curated_scaffold_908_23
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

25812..27551
DNA (1740bp) protein (580aa)
GMC family oxidoreductase Tax=Segetibacter koreensis RepID=UPI0003722B4A
GMC family oxidoreductase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
anamox1_curated_scaffold_908_24
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27565..28245
DNA (681bp) protein (227aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TR51_NIAKG
Transcriptional initiation protein Tat {ECO:0000313|EMBL:KIC89781.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
anamox1_curated_scaffold_908_25
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28272..29015
DNA (744bp) protein (248aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003695908
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU63245.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
anamox1_curated_scaffold_908_26
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(29022..30425)
DNA (1404bp) protein (468aa)
hypothetical protein Tax=Pontibacter roseus RepID=UPI00037BF9DA
Cbb3-type cytochrome oxidase subunit 1
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
anamox1_curated_scaffold_908_27
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(30400..30801)
DNA (402bp) protein (134aa)
Nitric-oxide reductase subunit C Tax=Formosa sp. AK20 RepID=M7NC78_9FLAO
cytochrome C
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
anamox1_curated_scaffold_908_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30881..31558)
DNA (678bp) protein (226aa)
NAD-dependent epimerase/dehydratase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNW5_NIAKG
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:AEW02050.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
anamox1_curated_scaffold_908_29
unknown

Not on your lists

comp(31654..31767)
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 29 items

View Taxonomy