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LC_0.1_scaffold_4180

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
LC_0.1_scaffold_4180_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(58..798)
DNA (741bp) protein (247aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TT54_METAC
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:KCZ70320.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Fumarylacetoacetate hydrolase family protein
LC_0.1_scaffold_4180_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1087..1272
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNR8_METZD
Uncharacterized protein {ECO:0000313|EMBL:KCZ70319.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_4180_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1274..1531
DNA (258bp) protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ70318.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_4180_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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1641..2036
DNA (396bp) protein (132aa)
purE; phosphoribosylaminoimidazole carboxylase catalytic subunit PurE (EC:5.4.99.18)
Phosphoribosylaminoimidazole carboxylase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MIE0_9EURY
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_4180_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2163..3503
DNA (1341bp) protein (447aa)
Erythromycin esterase n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GDQ9_METPE
Erythromycin esterase-like enzyme {ECO:0000313|EMBL:KCZ71883.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
erythromycin esterase
LC_0.1_scaffold_4180_6
Mannheimia varigena, Mannheimia, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

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3680..3949
DNA (270bp) protein (90aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG79315.1}; TaxID=1434215 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia.;" source="Mannheimia varigena USDA-ARS-USMARC-1388.;"
LC_0.1_scaffold_4180_7
unknown

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4220..4327
DNA (108bp) protein (36aa)

This feature has no annotations

LC_0.1_scaffold_4180_8
unknown

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4429..4671
DNA (243bp) protein (81aa)

This feature has no annotations

LC_0.1_scaffold_4180_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4913..5125
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46DP8_METBF
Putative RNA-binding protein, contains TRAM domain {ECO:0000313|EMBL:KCZ71833.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
translation initiation factor IF-2 subunit beta
LC_0.1_scaffold_4180_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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5442..5636
DNA (195bp) protein (65aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_4180_11
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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5705..6823
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W3K9_UNCMA
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_4180_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6828..9386)
DNA (2559bp) protein (853aa)
Magnesium-translocating P-type ATPase {ECO:0000313|EMBL:KCZ72517.1}; EC=3.6.3.2 {ECO:0000313|EMBL:KCZ72517.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
magnesium-translocating P-type ATPase id=14426023 bin=bin1_lowGC species=Methanomethylovorans hollandica genus=Methanomethylovorans taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
magnesium-translocating P-type ATPase
LC_0.1_scaffold_4180_13
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(9526..10176)
DNA (651bp) protein (217aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon GZfos34A6 RepID=Q649W7_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:AKB69234.1}; TaxID=1434114 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei LYC.;"
hypothetical protein
LC_0.1_scaffold_4180_14
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10220..10579)
DNA (360bp) protein (120aa)
Conserved protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PRR9_METMA
Uncharacterized protein {ECO:0000313|EMBL:AKB66792.1}; TaxID=1434114 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei LYC.;"
hypothetical protein
Displaying 14 items

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