ggKbase home page

LC_0.1_scaffold_1090

Search features with annotation key words

Displaying 30 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
LC_0.1_scaffold_1090_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

136..1188
DNA (1053bp) protein (351aa)
UPI0003D1B632 related cluster n=1 Tax=unknown RepID=UPI0003D1B632
Uncharacterized Fe-S center protein {ECO:0000313|EMBL:KCZ72458.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
4Fe-4S ferredoxin
LC_0.1_scaffold_1090_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(1209..1619)
DNA (411bp) protein (137aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_1090_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(1624..2652)
DNA (1029bp) protein (343aa)
Small-conductance mechanosensitive channel n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HHZ2_METFS
small-conductance mechanosensitive channel
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_1090_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2735..3679
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8USQ3_9AQUI
Biotin synthetase-like uncharacterized protein {ECO:0000313|EMBL:KCZ70984.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
biotin synthase
LC_0.1_scaffold_1090_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3676..4503
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L0U7_9BACT
Peptidase family M23 {ECO:0000313|EMBL:KCZ70983.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
peptidase family M23
LC_0.1_scaffold_1090_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4478..4969)
DNA (492bp) protein (164aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72744.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_1090_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5028..5459
DNA (432bp) protein (144aa)
Probable glycine cleavage system H protein n=2 Tax=Pyrococcus furiosus RepID=GCSH_PYRFU
Probable glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
glycine cleavage system protein H
LC_0.1_scaffold_1090_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5522..5950
DNA (429bp) protein (143aa)
Glycine cleavage system H protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8FBW9_9DELT
Probable glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
glycine cleavage system H protein
LC_0.1_scaffold_1090_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5951..6337)
DNA (387bp) protein (129aa)
JAMM-like protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XM15_METZD
Proteasome Rpn11 subunit JAMM motif {ECO:0000313|EMBL:KCZ73143.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
JAMM
LC_0.1_scaffold_1090_trna_1
unknown

Not on your lists

comp(6446..6519)
DNA (74bp)
transferRNA Lys
LC_0.1_scaffold_1090_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

6629..7903
DNA (1275bp) protein (425aa)
hmgA-1; hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.34 1.1.1.88)
Hydroxymethylglutaryl-CoA reductase, degradative n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I942_METCZ
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_1090_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7930..8301
DNA (372bp) protein (124aa)
Putative peroxiredoxin n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KW83_METHD
Putative peroxiredoxin {ECO:0000313|EMBL:KCZ71735.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative peroxiredoxin
LC_0.1_scaffold_1090_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8345..9553
DNA (1209bp) protein (403aa)
3-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}; Short=HMG-CoA reductase {ECO:0000256|RuleBase:RU361219};; EC=1.1.1.34 {ECO:0000256|RuleBase:RU361219};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC:1.1.1.34)
3-hydroxy-3-methylglutaryl-CoA reductase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12X00_METBU
LC_0.1_scaffold_1090_13
GWC1_OD1_36_108, Parcubacteria, Bacteria

Not on your lists

9658..10032
DNA (375bp) protein (125aa)
Blue (Type 1) copper domain protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E936_METEZ
Plastocyanin {ECO:0000313|EMBL:KKP89665.1}; TaxID=1618894 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_36_108.;"
blue (type 1) copper domain-containing protein
LC_0.1_scaffold_1090_14
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

10260..11312
DNA (1053bp) protein (351aa)
Putative rod shape-determining protein MreB n=1 Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0ICK8_PHYMF
mreB; putative rod shape-determining protein MreB
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_1090_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

11313..11924
DNA (612bp) protein (204aa)
Flagella protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNV7_METZD
flagella protein
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_1090_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12040..12483
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W4A0_UNCMA
Putative transcriptional regulator {ECO:0000313|EMBL:KCZ71227.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_1090_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12473..14749
DNA (2277bp) protein (759aa)
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
phosphoenolpyruvate synthase (EC:2.7.9.2)
Phosphoenolpyruvate synthase n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B9N0_METTP
LC_0.1_scaffold_1090_18

Not on your lists

14784..15479
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RZD5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKL55820.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
LC_0.1_scaffold_1090_19
unknown

Not on your lists

15482..16063
DNA (582bp) protein (194aa)

This feature has no annotations

LC_0.1_scaffold_1090_20
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16068..16280
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q2N7_9BACT
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_1090_21
R_Nitrospinae_39_10, Nitrospinae, Bacteria

Not on your lists

16280..16672
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q2N8_9BACT
PIN domain-containing protein
Tax=RIFCSPLOWO2_01_FULL_Nitrospinae_39_10_curated
LC_0.1_scaffold_1090_22
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16815..17030
DNA (216bp) protein (72aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_1090_23
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

17039..17302
DNA (264bp) protein (88aa)
Putative toxin RelE4 n=1 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=RELE4_METJA
hypothetical protein
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
LC_0.1_scaffold_1090_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17617..18267
DNA (651bp) protein (217aa)
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:KCZ71819.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
methyltransferase type 11 id=14632213 bin=bin9_gal15 species=Nitrosomonas sp. AL212 genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
methyltransferase type 11
LC_0.1_scaffold_1090_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

18313..18630
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XKQ4_METZD
Uncharacterized protein {ECO:0000313|EMBL:KCZ71661.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_1090_26
CG_Solirubrobact_01, Rubrobacteridae, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18683..19834
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI00036F29B1
cyclase family protein
Tax=CG_Solirubrobact_01
LC_0.1_scaffold_1090_27
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

19839..20291
DNA (453bp) protein (151aa)
Protein kinase n=5 Tax=Pelosinus fermentans RepID=I8RG82_9FIRM
Protein kinase {ECO:0000313|EMBL:EIW19588.1}; TaxID=1149862 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans B4.;"
LC_0.1_scaffold_1090_28
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20420..22336
DNA (1917bp) protein (639aa)
hypothetical protein n=1 Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI0003720DBB
hypothetical protein
Tax=GWA2_Gallionellales_55_18_curated
LC_0.1_scaffold_1090_29
unknown

Not on your lists

22329..22931
DNA (603bp) protein (201aa)

This feature has no annotations

Displaying 30 items

View Taxonomy