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LC_0.1_scaffold_143

Search features with annotation key words

Displaying items 1-30 of 55 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
LC_0.1_scaffold_143_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(139..456)
DNA (318bp) protein (106aa)
Putative uncharacterized protein n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KQ92_ARCVS
hypothetical protein
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
LC_0.1_scaffold_143_2
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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705..1022
DNA (318bp) protein (106aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JCX2_9ARCH
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_143_3

Not on your lists

1022..1333
DNA (312bp) protein (104aa)
Nucleic acid binding protein n=1 Tax=uncultured organism RepID=M1Q266_9ZZZZ
Marine sediment metagenome DNA, contig: S03H2_S20032 {ECO:0000313|EMBL:GAH89728.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
LC_0.1_scaffold_143_4
RBG_16_OP11_Levybacteria_35_11_curated, Levybacteria, Microgenomates, Bacteria

Not on your lists

1330..1503
DNA (174bp) protein (58aa)
Tax=RBG_16_OP11_Levybacteria_35_11_curated
LC_0.1_scaffold_143_5
unknown

Not on your lists

1493..1705
DNA (213bp) protein (71aa)
hypothetical protein
LC_0.1_scaffold_143_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1712..2401)
DNA (690bp) protein (230aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E735_METEZ
Uncharacterized protein {ECO:0000313|EMBL:KCZ73012.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
short-chain dehydrogenase/reductase SDR
LC_0.1_scaffold_143_7
R_OD1_Yanofskybacteria_49_25, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

2853..3593
DNA (741bp) protein (247aa)
Putative metallo-hydrolase/oxidoreductase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AS52_AZOBR
putative metallo-hydrolase/oxidoreductase
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_49_25_curated
LC_0.1_scaffold_143_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3680..4309
DNA (630bp) protein (210aa)
PyrE-like protein 2 n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=PYEL2_METBF
PyrE-like protein {ECO:0000256|HAMAP-Rule:MF_01214}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
orotate phosphoribosyltransferase
LC_0.1_scaffold_143_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4311..4814
DNA (504bp) protein (168aa)
Putative membrane-bound metal-dependent hydrolase (DUF457) {ECO:0000313|EMBL:KCZ71350.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_143_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4817..6274
DNA (1458bp) protein (486aa)
Probable cobyric acid synthase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=COBQ_METAC
Probable cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Cobyric acid synthase
LC_0.1_scaffold_143_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6274..7218
DNA (945bp) protein (315aa)
Translation initiation factor 2B, subunit 2 n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W0H9_UNCMA
Ribose-1,5-bisphosphate isomerase, e2b2 family {ECO:0000313|EMBL:KCZ71348.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
eif2b2; translation initiation factor IF-2B subunit delta
LC_0.1_scaffold_143_12
unknown

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7257..7916
DNA (660bp) protein (220aa)

This feature has no annotations

LC_0.1_scaffold_143_13
unknown

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8019..8591
DNA (573bp) protein (191aa)

This feature has no annotations

LC_0.1_scaffold_143_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8602..9894)
DNA (1293bp) protein (431aa)
Ribulose bisphosphate carboxylase {ECO:0000256|HAMAP-Rule:MF_01133}; Short=RuBisCO {ECO:0000256|HAMAP-Rule:MF_01133};; EC=4.1.1.39 {ECO:0000256|HAMAP-Rule:MF_01133};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rbcL; ribulose bisophosphate carboxylase (EC:4.1.1.39); K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] id=5040672 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
rbcL; ribulose bisophosphate carboxylase (EC:4.1.1.39)
LC_0.1_scaffold_143_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9924..10907)
DNA (984bp) protein (328aa)
Putative HTH-type transcriptional regulatory protein Mbur_1811 n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Y1811_METBU
Putative HTH-type transcriptional regulatory protein ANME2D_03287 {ECO:0000256|HAMAP-Rule:MF_00584}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_143_16
unknown

Not on your lists

comp(10995..11642)
DNA (648bp) protein (216aa)

This feature has no annotations

LC_0.1_scaffold_143_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11907..13229
DNA (1323bp) protein (441aa)
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS {ECO:0000256|HAMAP-Rule:MF_01892}; Short=tRNA(Ile2)-agm2C synthetase {ECO:0000256|HAMAP-Rule:MF_01892};; EC=6.3.4.22 {ECO:0000256|HAMAP-Rule:MF_01892};; tRNA(Ile2) agmatidine synthetase {ECO:0000256|HAMAP-Rule:MF_01892}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B6S8_METTP
hypothetical protein
LC_0.1_scaffold_143_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13132..13902)
DNA (771bp) protein (257aa)
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
NH(3)-dependent NAD(+) synthetase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MDH7_9EURY
NAD+ synthetase
LC_0.1_scaffold_143_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14181..14357
DNA (177bp) protein (59aa)
Growth regulator {ECO:0000313|EMBL:KCZ73349.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_143_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14409..16748
DNA (2340bp) protein (780aa)
Polyferredoxin, heterodixulfide reductase subunit A {ECO:0000313|EMBL:KCZ72580.1}; EC=1.8.98.1 {ECO:0000313|EMBL:KCZ72580.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1A642 related cluster n=1 Tax=unknown RepID=UPI0003D1A642
methyl-viologen-reducing hydrogenase, delta subunit
LC_0.1_scaffold_143_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16745..18061
DNA (1317bp) protein (439aa)
NADH:ubiquinone oxidoreductase chain I-like protein {ECO:0000313|EMBL:KCZ72579.1}; EC=1.2.99.5 {ECO:0000313|EMBL:KCZ72579.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1AE8E related cluster n=1 Tax=unknown RepID=UPI0003D1AE8E
4Fe-4S ferredoxin
LC_0.1_scaffold_143_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

18142..18666
DNA (525bp) protein (175aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72901.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_143_23
Paraglaciecola psychrophila, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18715..18939
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Glaciecola psychrophila 170 RepID=M4RUX4_9ALTE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH46453.1}; TaxID=1129794 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola psychrophila 170.;"
LC_0.1_scaffold_143_24
Methanoculleus sp. MH98A, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19002..19499
DNA (498bp) protein (166aa)
Hypothetical membrane protein n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LL59_THEBM
Uncharacterized protein {ECO:0000313|EMBL:KDE54973.1}; TaxID=1495314 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus.;" source="Methanoculleus sp. MH98A.;"
hypothetical protein
LC_0.1_scaffold_143_25
unknown

Not on your lists

comp(19559..20782)
DNA (1224bp) protein (408aa)

This feature has no annotations

LC_0.1_scaffold_143_26
unknown

Not on your lists

comp(20791..21384)
DNA (594bp) protein (198aa)

This feature has no annotations

LC_0.1_scaffold_143_27
unknown

Not on your lists

comp(21411..21674)
DNA (264bp) protein (88aa)

This feature has no annotations

LC_0.1_scaffold_143_28
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21788..23188)
DNA (1401bp) protein (467aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12UL7_METBU
LC_0.1_scaffold_143_29
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23427..24422)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9EH53_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:CDX20094.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
LC_0.1_scaffold_143_30
unknown

Not on your lists

24855..25361
DNA (507bp) protein (169aa)

This feature has no annotations

Displaying items 1-30 of 55 in total

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