ggKbase home page

LC_0.1_scaffold_225

Search features with annotation key words

Displaying items 1-30 of 56 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
LC_0.1_scaffold_225_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

252..818
DNA (567bp) protein (189aa)
UPI0003D1C6DB related cluster n=1 Tax=unknown RepID=UPI0003D1C6DB
Signal peptidase I {ECO:0000313|EMBL:KCZ72551.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
signal sequence peptidase
LC_0.1_scaffold_225_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

905..1480
DNA (576bp) protein (192aa)
UPI0003D1C6DB related cluster n=1 Tax=unknown RepID=UPI0003D1C6DB
Signal peptidase I {ECO:0000313|EMBL:KCZ72551.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
peptidase S26B, signal peptidase
LC_0.1_scaffold_225_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1469..2710)
DNA (1242bp) protein (414aa)
UPI0003D1AD7B related cluster n=1 Tax=unknown RepID=UPI0003D1AD7B
ORC1-type DNA replication protein {ECO:0000256|HAMAP-Rule:MF_01407}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
cdc6; cell division control protein 6
LC_0.1_scaffold_225_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3338..3607)
DNA (270bp) protein (90aa)
UPF0147 protein UNCMA_18170 n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W5G2_UNCMA
UPF0147 protein ANME2D_00978 {ECO:0000256|HAMAP-Rule:MF_00342}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_225_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

3711..4112
DNA (402bp) protein (134aa)
Sjogrens syndrome scleroderma autoantigen 1 n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B953_METTP
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_225_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(4131..5270)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSV2_METAC
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_225_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5436..5810
DNA (375bp) protein (125aa)
NADH:ubiquinone oxidoreductase subunit 3 (Chain A) {ECO:0000313|EMBL:KCZ72545.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KCZ72545.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
nuoA; NADH-quinone oxidoreductase membrane subunit A (EC:1.6.99.5)
NADH dehydrogenase I subunit A n=1 Tax=uncultured prokaryote RepID=H5SPA0_9ZZZZ
LC_0.1_scaffold_225_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5798..6391
DNA (594bp) protein (198aa)
NADH-quinone oxidoreductase, B subunit {ECO:0000313|EMBL:KCZ72544.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KCZ72544.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
NADH-quinone oxidoreductase subunit B (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit B n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPT2_9FIRM
LC_0.1_scaffold_225_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6388..6891
DNA (504bp) protein (168aa)
NADH/F420H2 dehydrogenase, subunit C {ECO:0000313|EMBL:KCZ72543.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KCZ72543.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon I-plasma RepID=T0LN11_9EURY
NADH (or F420H2) dehydrogenase subunit C
LC_0.1_scaffold_225_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6891..8039
DNA (1149bp) protein (383aa)
NADH dehydrogenase I, D subunit {ECO:0000313|EMBL:KCZ72542.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KCZ72542.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
NADH dehydrogenase subunit D (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit D n=1 Tax=Dehalococcoides ethenogenes (strain 195) RepID=NUOD_DEHE1
LC_0.1_scaffold_225_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8044..9141
DNA (1098bp) protein (366aa)
nuoH; NADH-quinone oxidoreductase subunit H (NADH dehydrogenase I, chain H) (NDH-1, chain H) (EC:1.6.5.3 1.6.99.5) id=14429490 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
NADH dehydrogenase (quinone) (EC:1.6.99.5)
F(420)H(2) oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; F(420)H(2) dehydrogenase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; FPO subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_225_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9141..9557
DNA (417bp) protein (139aa)
NADH-quinone oxidoreductase, chain I {ECO:0000313|EMBL:KCZ72540.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KCZ72540.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
NADH-quinone oxidoreductase subunit I n=1 Tax=Gluconacetobacter hansenii ATCC 23769 RepID=D5QHD4_GLUHA
Ketoisovalerate oxidoreductase subunit VorD
LC_0.1_scaffold_225_13
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

9554..9808
DNA (255bp) protein (85aa)
Putative NADH-quinone oxidoreductase chain J id=1722526 bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
nuoJ2, SCD39.04; NADH dehydrogenase subunit NuoJ2
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_225_14
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9798..10049
DNA (252bp) protein (84aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_225_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

10051..10350
DNA (300bp) protein (100aa)
UPI0003D1C60C related cluster n=1 Tax=unknown RepID=UPI0003D1C60C
F420H2 dehydrogenase subunit K
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_225_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10352..12316
DNA (1965bp) protein (655aa)
F420H2 dehydrogenase subunit L {ECO:0000313|EMBL:KCZ72536.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KCZ72536.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5)
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPK4_METZD
LC_0.1_scaffold_225_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12318..13814
DNA (1497bp) protein (499aa)
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:KCZ72535.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KCZ72535.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E6I7_METEZ
proton-translocating NADH-quinone oxidoreductase subunit M
LC_0.1_scaffold_225_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13811..15283
DNA (1473bp) protein (491aa)
F420H2 dehydrogenase subunit N {ECO:0000313|EMBL:KCZ72534.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KCZ72534.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Proton-translocating NADH-quinone oxidoreductase, chain N n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E6I8_METEZ
proton-translocating NADH-quinone oxidoreductase subunit N
LC_0.1_scaffold_225_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15285..15635
DNA (351bp) protein (117aa)
F420H2 dehydrogenase, subunit FpoO n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E7E7_METMS
F420H2 dehydrogenase subunit O {ECO:0000313|EMBL:KCZ72533.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
F420H2 dehydrogenase, subunit FpoO
LC_0.1_scaffold_225_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15645..16049)
DNA (405bp) protein (135aa)
Cytochrome c-type biogenesis protein CcmE {ECO:0000313|EMBL:KCZ72342.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_225_21
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16240..19029
DNA (2790bp) protein (930aa)
Tax=RBG_16_Desulfobacca_60_12_curated
LC_0.1_scaffold_225_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19100..19621)
DNA (522bp) protein (174aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ70633.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Putative uncharacterized protein id=3688777 bin=PER_GWC2_41_7 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein
LC_0.1_scaffold_225_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19633..20172)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I2U3_CLOCE
Uncharacterized protein {ECO:0000313|EMBL:KCZ70634.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_225_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20250..20777
DNA (528bp) protein (176aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73566.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_225_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20883..21893
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYB9_METFV
Uncharacterized protein {ECO:0000313|EMBL:KCZ73409.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_225_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

21901..22266
DNA (366bp) protein (122aa)
Probable hydrogenase nickel incorporation protein HypA n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PX23_METTM
Probable hydrogenase nickel incorporation protein HypA {ECO:0000256|HAMAP-Rule:MF_00213}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypA; hydrogenase maturation factor HypA
LC_0.1_scaffold_225_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(22274..22492)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EAG1_METEZ
Uncharacterized protein {ECO:0000313|EMBL:KCZ73411.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_225_28
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

22603..22977
DNA (375bp) protein (125aa)
Sporulation protein YtfJ n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XN60_METZD
Sporulation protein YtfJ
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_225_29
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

23002..23625
DNA (624bp) protein (208aa)
Uncharacterized protein n=2 Tax=Methanosarcina mazei RepID=M1QJ75_METMZ
Uncharacterized protein {ECO:0000313|EMBL:KCZ73413.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_225_30
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

23668..24714
DNA (1047bp) protein (349aa)
Peptidase U32 family protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12VU2_METBU
Collagenase-like protease {ECO:0000313|EMBL:KCZ71957.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
peptidase U32
Displaying items 1-30 of 56 in total

View Taxonomy