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LC_0.1_scaffold_413

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
LC_0.1_scaffold_413_1
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

252..986
DNA (735bp) protein (245aa)
Site-specific recombinase, DNA invertase Pin n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z498_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KJB89873.1}; Flags: Fragment;; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
pinR; site-specific recombinase/DNA invertase
LC_0.1_scaffold_413_2
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1374..2330)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B37C8E
modification methylase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_413_3
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2320..3837)
DNA (1518bp) protein (506aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_413_4
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4290..5246)
DNA (957bp) protein (319aa)
type II site-specific deoxyribonuclease (EC:3.1.21.4)
Type II site-specific deoxyribonuclease id=2154213 bin=GWB2_Nitrospirae_rel_47_37 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_413_5
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5246..6748)
DNA (1503bp) protein (501aa)
Methyltransferase domain (EC:2.1.1.113)
DNA-methyltransferase id=2154211 bin=GWB2_Nitrospirae_rel_47_37 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_413_6
unknown

Not on your lists

comp(6752..7591)
DNA (840bp) protein (280aa)

This feature has no annotations

LC_0.1_scaffold_413_7

Not on your lists

comp(7663..9117)
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TS28_METAC
Uncharacterized protein {ECO:0000313|EMBL:KKM99084.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
LC_0.1_scaffold_413_8
RBG_16_OP11_Levybacteria_35_11_curated, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(9107..10513)
DNA (1407bp) protein (469aa)
Tax=RBG_16_OP11_Levybacteria_35_11_curated
LC_0.1_scaffold_413_9
Gordonia otitidis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10629..13253)
DNA (2625bp) protein (875aa)
Uncharacterized protein n=1 Tax=Dehalococcoides mccartyi GY50 RepID=V5QF02_9CHLR
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:GAB35997.1}; TaxID=1108044 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia otitidis NBRC 100426.;"
LC_0.1_scaffold_413_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13295..15691)
DNA (2397bp) protein (799aa)
Ribonucleoside-triphosphate reductase class III catalytic subunit {ECO:0000313|EMBL:KCZ71848.1}; EC=1.17.4.2 {ECO:0000313|EMBL:KCZ71848.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQ09_METZD
anaerobic ribonucleoside-triphosphate reductase
LC_0.1_scaffold_413_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15734..15991)
DNA (258bp) protein (86aa)
Protein with glutaredoxin domain n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12U79_METBU
Glutaredoxin-like protein {ECO:0000313|EMBL:KCZ71847.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
glutaredoxin-like protein
LC_0.1_scaffold_413_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


16204..17898
DNA (1695bp) protein (565aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Arginine--tRNA ligase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MPG9_9EURY
argS; arginyl-tRNA synthetase
LC_0.1_scaffold_413_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17901..18743
DNA (843bp) protein (281aa)
Molybdopterin synthase subunit MoaE {ECO:0000313|EMBL:KCZ71845.1}; EC=2.8.1.12 {ECO:0000313|EMBL:KCZ71845.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Molybdopterin-guanine dinucleotide biosynthesis protein MobB n=2 Tax=Methanosarcina mazei RepID=M1QM64_METMZ
Molybdopterin-guanine dinucleotide biosynthesis protein MobB
LC_0.1_scaffold_413_14
unknown

Not on your lists

18975..19562
DNA (588bp) protein (196aa)

This feature has no annotations

LC_0.1_scaffold_413_15
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19575..21500
DNA (1926bp) protein (642aa)
Putative multicopper oxidase n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K049_CLOPA
putative multicopper oxidase
Putative multicopper oxidase {ECO:0000313|EMBL:AGK95151.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
LC_0.1_scaffold_413_16
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21746..24025
DNA (2280bp) protein (760aa)
Multicopper oxidase, putative n=2 Tax=Geobacter metallireducens RepID=Q39SH2_GEOMG
multicopper oxidase
Multicopper oxidase {ECO:0000313|EMBL:AJE02653.1}; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
LC_0.1_scaffold_413_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

24500..25048
DNA (549bp) protein (183aa)
Hth5 family protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8THE1_METAC
Putative transcriptional regulator {ECO:0000313|EMBL:KCZ72074.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Hth5 family protein
LC_0.1_scaffold_413_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

25094..25585
DNA (492bp) protein (164aa)
Heat shock protein Hsp20 n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L3F9_KORCO
Molecular chaperone (Small heat shock protein) {ECO:0000313|EMBL:KCZ72075.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
heat shock protein Hsp20
LC_0.1_scaffold_413_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

25620..27812
DNA (2193bp) protein (731aa)
AAA family ATPase, CDC48 subfamily protein (EC:3.6.4.6)
AAA family ATPase, CDC48 subfamily n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B6J8_METTP
AAA family ATPase, CDC48 subfamily {ECO:0000313|EMBL:KCZ72076.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_413_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

27907..30120
DNA (2214bp) protein (738aa)
AAA ATPase (EC:3.6.1.3)
AAA family ATPase, CDC48 subfamily n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPD2_METZD
AAA family ATPase, CDC48 subfamily {ECO:0000313|EMBL:KCZ71917.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_413_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

30123..30551
DNA (429bp) protein (143aa)
Molecular chaperone (Small heat shock protein) {ECO:0000313|EMBL:KCZ71918.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_413_22
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

30578..30952
DNA (375bp) protein (125aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_413_23
unknown

Not on your lists

comp(31099..31212)
DNA (114bp) protein (38aa)

This feature has no annotations

LC_0.1_scaffold_413_24
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

31404..32249
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003722246
integrase family protein
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_413_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(33032..33259)
DNA (228bp) protein (76aa)
Toxin-antitoxin system, toxin component, HicA family n=1 Tax=delta proteobacterium NaphS2 RepID=D8FBP3_9DELT
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:KCZ71864.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_413_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(33256..33504)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GHV0_METPE
Uncharacterized protein {ECO:0000313|EMBL:KCZ71865.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_413_27
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(33559..34734)
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Fischerella sp. PCC 9339 RepID=UPI0003003B14
Restriction endonuclease S subunits
Putative Restriction endonuclease S subunits {ECO:0000313|EMBL:CBE69027.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
LC_0.1_scaffold_413_28
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(35126..36364)
DNA (1239bp) protein (413aa)
Transposase, IS116/IS110/IS902 family n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BW46_METCG
transposase, IS116/IS110/IS902 family
Transposase, IS116/IS110/IS902 family {ECO:0000313|EMBL:AEB68476.1}; TaxID=990316 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
Displaying 28 items

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