ggKbase home page

LC_0.1_scaffold_505

Search features with annotation key words

Displaying items 1-30 of 38 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
LC_0.1_scaffold_505_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(175..1161)
DNA (987bp) protein (329aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72591.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_505_trna_3
unknown

Not on your lists

comp(1431..1513)
DNA (83bp)
transferRNA Leu
LC_0.1_scaffold_505_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1597..2586
DNA (990bp) protein (330aa)
FO synthase subunit 1 {ECO:0000256|HAMAP-Rule:MF_01611}; EC=2.5.1.77 {ECO:0000256|HAMAP-Rule:MF_01611};; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1 {ECO:0000256|HAMAP-Rule:MF_01611}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
cofG; FO synthase subunit 1 (EC:2.5.1.-)
FO synthase subunit 1 n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=COFG_METBU
LC_0.1_scaffold_505_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2655..3695
DNA (1041bp) protein (347aa)
FO synthase subunit 2 {ECO:0000256|HAMAP-Rule:MF_01612}; EC=2.5.1.77 {ECO:0000256|HAMAP-Rule:MF_01612};; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2 {ECO:0000256|HAMAP-Rule:MF_01612}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
FO synthase subunit 2 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MSP4_9EURY
FO synthase subunit 2
LC_0.1_scaffold_505_4
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3720..4199
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WRC6_METH6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET65587.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta harundinacea (strain 6Ac).;"
LC_0.1_scaffold_505_5
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4217..4681
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46DA5_METBF
Methyl-accepting chemotaxis protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_505_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4690..4983)
DNA (294bp) protein (98aa)
Putative uncharacterized protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12ZI1_METBU
Uncharacterized protein {ECO:0000313|EMBL:KCZ71019.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_505_7
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

5394..9986
DNA (4593bp) protein (1531aa)
Fibronectin type III domain protein n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GHY4_METPE
fibronectin type III domain-containing protein
Tax=RBG_16_Actinobacteria_70_17_curated
LC_0.1_scaffold_505_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10109..10717)
DNA (609bp) protein (203aa)
Translation factor SUA5 n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I767_METCZ
Sua5/YciO/YrdC/YwlC family protein {ECO:0000313|EMBL:KCZ71020.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
translation factor SUA5
LC_0.1_scaffold_505_9
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10739..11011)
DNA (273bp) protein (91aa)
Ferredoxin n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PVY1_METMA
ferredoxin
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_505_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(11183..12277)
DNA (1095bp) protein (365aa)
Tubulin/FtsZ GTPase n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPD9_METZD
Tubulin/FtsZ GTPase
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_505_11
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12287..13405)
DNA (1119bp) protein (373aa)
hypothetical protein
Putative uncharacterized protein id=4445728 bin=GWF2_Planctomycetes_42_9 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_505_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13505..14317)
DNA (813bp) protein (271aa)
Nicotinate-nucleotide pyrophosphorylase [carboxylating] {ECO:0000256|PIRNR:PIRNR006250}; EC=2.4.2.19 {ECO:0000256|PIRNR:PIRNR006250};; Quinolinate phosphoribosyltransferase [decarboxylating] {ECO:0000256|PIRNR:PIRNR006250}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Quinolinate phosphoribosyltransferase (decarboxylating) (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase [carboxylating] n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TS50_METAC
LC_0.1_scaffold_505_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14414..15226
DNA (813bp) protein (271aa)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
L-aspartate dehydrogenase (EC:1.4.1.21)
UPI0003D1A533 related cluster n=1 Tax=unknown RepID=UPI0003D1A533
LC_0.1_scaffold_505_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15228..16103
DNA (876bp) protein (292aa)
Sec-independent periplasmic protein translocase n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KQ26_ARCVS
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Sec-independent periplasmic protein translocase
LC_0.1_scaffold_505_15
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

comp(16178..16552)
DNA (375bp) protein (125aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
Ribonuclease VapC n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5S9W6_9BACT
PilT protein domain-containing protein
LC_0.1_scaffold_505_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17016..18701)
DNA (1686bp) protein (562aa)
Peptidase M50 family protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12Z71_METBU
Putative membrane-associated Zn-dependent protease {ECO:0000313|EMBL:KCZ72602.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
peptidase M50
LC_0.1_scaffold_505_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

18763..19071
DNA (309bp) protein (103aa)
CutA1 divalent ion tolerance protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EAZ2_METEZ
Uncharacterized protein {ECO:0000313|EMBL:KCZ72601.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
CutA1 divalent ion tolerance protein
LC_0.1_scaffold_505_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19074..19625
DNA (552bp) protein (184aa)
Protein of DIM6/NTAB family n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7U8V5_9EURY
Conserved protein of DIM6/NTAB family {ECO:0000313|EMBL:KCZ72600.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_505_19

Not on your lists

comp(19703..20023)
DNA (321bp) protein (107aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JB23_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKL55470.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
addiction module antitoxin
LC_0.1_scaffold_505_20
Peptococcaceae bacterium SCADC1_2_3, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20008..20196)
DNA (189bp) protein (63aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JB22_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KFD40548.1}; TaxID=1487582 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium SCADC1_2_3.;"
threonyl-tRNA synthetase
LC_0.1_scaffold_505_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(20267..20809)
DNA (543bp) protein (181aa)
Putative metalloprotease n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7KAW5_METBM
Putative metalloprotease {ECO:0000313|EMBL:KCZ72965.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative metalloprotease
LC_0.1_scaffold_505_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(20809..21237)
DNA (429bp) protein (143aa)
Bis(5'-nucleosyl)-tetraphosphatase[asymmetrical] n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7KE21_METBM
NTP pyrophosphohydrolase {ECO:0000313|EMBL:KCZ72963.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
NUDIX hydrolase
LC_0.1_scaffold_505_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21234..21800)
DNA (567bp) protein (189aa)
Uracil-DNA glycosylase, family 4 {ECO:0000313|EMBL:KCZ72962.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KCZ72962.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Phage SPO1 DNA polymerase-related protein n=1 Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CY07_METMJ
phage SPO1 DNA polymerase-related protein
LC_0.1_scaffold_505_trna_1
unknown

Not on your lists

22242..22313
DNA (72bp)
transferRNA Cys
LC_0.1_scaffold_505_24
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(22531..23280)
DNA (750bp) protein (250aa)
Predicted ABC-type transport system, permease component n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W2Y1_UNCMA
ABC transporter permease
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_505_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(23273..23947)
DNA (675bp) protein (225aa)
ABC-type transport system, ATPase component n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W2Y0_UNCMA
ABC-type phosphate transport system, ATPase component {ECO:0000313|EMBL:KCZ72960.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ABC-type transport system, ATPase component
LC_0.1_scaffold_505_26

Not on your lists

24124..27153
DNA (3030bp) protein (1010aa)
DNA/RNA helicase (EC:3.6.-.-)
Putative DNA/RNA helicase (SNF2 family) n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W926_UNCMA
Uncharacterized protein {ECO:0000313|EMBL:KKN03680.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
LC_0.1_scaffold_505_27

Not on your lists

27221..28132
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W925_UNCMA
Uncharacterized protein {ECO:0000313|EMBL:KKN03681.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
LC_0.1_scaffold_505_trna_2
unknown

Not on your lists

comp(28197..28281)
DNA (85bp)
transferRNA Ser
Displaying items 1-30 of 38 in total

View Taxonomy