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LC_0.1_scaffold_519

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Displaying items 1-30 of 37 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
LC_0.1_scaffold_519_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1..690
DNA (690bp) protein (230aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72048.1}; Flags: Precursor;; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_519_2
unknown

Not on your lists

comp(591..881)
DNA (291bp) protein (97aa)

This feature has no annotations

LC_0.1_scaffold_519_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1597..4083
DNA (2487bp) protein (829aa)
UPI0003D1C70E related cluster n=1 Tax=unknown RepID=UPI0003D1C70E
Uncharacterized protein {ECO:0000313|EMBL:KCZ72049.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
peptidase S8 and S53 subtilisin kexin sedolisin
LC_0.1_scaffold_519_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4189..5322)
DNA (1134bp) protein (378aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_01244}; Short=DHQ synthase {ECO:0000256|HAMAP-Rule:MF_01244};; EC=1.4.1.24 {ECO:0000256|HAMAP-Rule:MF_01244};; 3-dehydroquinate synthase II {ECO:0000256|HAMAP-Rule:MF_01244}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
3-dehydroquinate synthase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MDZ5_9EURY
3-dehydroquinate synthase
LC_0.1_scaffold_519_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5319..6116)
DNA (798bp) protein (266aa)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase {ECO:0000256|HAMAP-Rule:MF_00960}; Short=ADH synthase {ECO:0000256|HAMAP-Rule:MF_00960};; Short=ADHS {ECO:0000256|HAMAP-Rule:MF_00960};; Short=ADTH synthase {ECO:0000256|HAMAP-Rule:MF_00960};; EC=2.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00960};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KV17_METHD
putative phospho-2-dehydro-3-deoxyheptonate aldolase
LC_0.1_scaffold_519_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6210..6578)
DNA (369bp) protein (123aa)
Roadblock/LC7 family protein n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KQ29_ARCVS
Uncharacterized protein {ECO:0000313|EMBL:KCZ72059.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Roadblock/LC7 family protein
LC_0.1_scaffold_519_7
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(6578..6919)
DNA (342bp) protein (114aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_519_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6929..8167)
DNA (1239bp) protein (413aa)
Proteasome-activating nucleotidase n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YXA2_METPS
Proteasome-activating nucleotidase {ECO:0000256|HAMAP-Rule:MF_00553}; Short=PAN {ECO:0000256|HAMAP-Rule:MF_00553};; Proteasomal ATPase {ECO:0000256|HAMAP-Rule:MF_00553}; Proteasome regulatory ATPase {ECO:0000256|HAMAP-Rule:MF_00553}; Proteasome regulatory particle {ECO:0000256|HAMAP-Rule:MF_00553}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
pan-2; proteasome-activating nucleotidase
LC_0.1_scaffold_519_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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8219..8704
DNA (486bp) protein (162aa)
Transcriptional regulator, XRE family n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B6C6_METTP
XRE family transcriptional regulator
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_519_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8962..10965)
DNA (2004bp) protein (668aa)
Ferrous iron transporter FeoB {ECO:0000313|EMBL:KCZ70454.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ferrous iron transporter B; K04759 ferrous iron transport protein B id=14625454 bin=bin7_NC10_sister species=Methanohalophilus mahii genus=Methanohalophilus taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
ferrous iron transporter B
LC_0.1_scaffold_519_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10965..11615)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003784980
Mn-dependent transcriptional regulator {ECO:0000313|EMBL:KCZ70455.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
FeoA family protein
LC_0.1_scaffold_519_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(11605..12471)
DNA (867bp) protein (289aa)
high-affinity iron transporter
high-affinity iron transporter; K07243 high-affinity iron transporter id=5241308 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_519_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12642..14357
DNA (1716bp) protein (572aa)
Aldehyde:ferredoxin oxidoreductase {ECO:0000313|EMBL:KCZ70428.1}; EC=1.2.7.5 {ECO:0000313|EMBL:KCZ70428.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Aldehyde:ferredoxin oxidoreductase n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HMP4_ACIS0
aldehyde:ferredoxin oxidoreductase
LC_0.1_scaffold_519_14
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14649..14786
DNA (138bp) protein (46aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_519_15
Methanocaldococcus sp. FS406-22, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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14783..15049
DNA (267bp) protein (89aa)
Plasmid stabilization system n=1 Tax=Methanocaldococcus sp. (strain FS406-22) RepID=D3S7W7_METSF
plasmid stabilization system
Plasmid stabilization system {ECO:0000313|EMBL:ADC69127.1}; TaxID=644281 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococcus sp. (strain FS406-22).;"
LC_0.1_scaffold_519_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15334..15582)
DNA (249bp) protein (83aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71320.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_519_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15694..16200)
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JIX0_9ARCH
Transposase {ECO:0000313|EMBL:KCZ70366.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
IS200/IS605 family OrfA transposase
LC_0.1_scaffold_519_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16253..16999)
DNA (747bp) protein (249aa)
Lipoate-protein ligase A {ECO:0000313|EMBL:KCZ72719.1}; EC=2.7.7.63 {ECO:0000313|EMBL:KCZ72719.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Lipoate-protein ligase A, C-terminal id=5799643 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
putative biotin/lipoate A/B protein ligase
LC_0.1_scaffold_519_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16996..17271)
DNA (276bp) protein (92aa)
lipoate-protein ligase A, N-terminal fragment (EC:6.3.4.-)
Bacterial lipoate protein ligase C-terminus {ECO:0000313|EMBL:KCZ72718.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Uncharacterized protein id=5799644 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
LC_0.1_scaffold_519_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17411..17869)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B660_METTP
Uncharacterized protein {ECO:0000313|EMBL:KCZ71195.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_519_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18009..20891)
DNA (2883bp) protein (961aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9VXR5_9CYAN
PAS domain S-box {ECO:0000313|EMBL:KCZ71179.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_519_22
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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21704..22228
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5ICB6_ACIB4
ATP-grasp superfamily enzyme
Tax=RBG_16_Euryarchaeota_68_12_curated
LC_0.1_scaffold_519_23
unknown

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22249..22428
DNA (180bp) protein (60aa)

This feature has no annotations

LC_0.1_scaffold_519_24
unknown

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22425..22571
DNA (147bp) protein (49aa)

This feature has no annotations

LC_0.1_scaffold_519_trna_1
unknown

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comp(22553..22626)
DNA (74bp)
transferRNA Thr
LC_0.1_scaffold_519_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(22682..24364)
DNA (1683bp) protein (561aa)
UPI0003D1C6D3 related cluster n=1 Tax=unknown RepID=UPI0003D1C6D3
Protein-export membrane protein SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Protein-export membrane protein SecD
LC_0.1_scaffold_519_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(24361..25296)
DNA (936bp) protein (312aa)
Protein-export membrane protein SecF n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L1H3_METHD
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
preprotein translocase subunit SecF
LC_0.1_scaffold_519_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

25476..25910
DNA (435bp) protein (145aa)
Deoxycytidylate deaminase {ECO:0000313|EMBL:KCZ72247.1}; EC=3.5.4.12 {ECO:0000313|EMBL:KCZ72247.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Deoxycytidylate deaminase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L1T5_METHD
deoxycytidylate deaminase
LC_0.1_scaffold_519_28
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

25917..26447
DNA (531bp) protein (177aa)
UPF0290 protein Mpsy_1082 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MMA3_9EURY
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_519_29
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

26448..26969
DNA (522bp) protein (174aa)
orotate phosphoribosyltransferase (EC:2.4.2.10)
UPI0003D1BF3C related cluster n=1 Tax=unknown RepID=UPI0003D1BF3C
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
Displaying items 1-30 of 37 in total

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