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LR_AMD_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
LR_AMD_scaffold_4_trna_1
unknown

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154..226
DNA (73bp)
transferRNA Gly
LR_AMD_scaffold_4_1
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(297..1853)
DNA (1557bp) protein (519aa)
AAA ATPase central domain protein Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGP5_9EURY
AAA ATPase central domain protein {ECO:0000313|EMBL:EET90392.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
Microtubule-severing ATPase
LR_AMD_scaffold_4_2
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(2016..2444)
DNA (429bp) protein (143aa)
Ribonuclease H Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGP6_9EURY
Ribonuclease H {ECO:0000313|EMBL:EET90393.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
Ribonuclease HI
LR_AMD_scaffold_4_3

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2546..3220
DNA (675bp) protein (225aa)
AMMECR1 domain-containing protein Tax=mine drainage metagenome RepID=T1BCD5_9ZZZZ
AMMECR1 domain-containing protein {ECO:0000313|EMBL:EQD66123.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
LR_AMD_scaffold_4_4

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3254..4888
DNA (1635bp) protein (545aa)
ATP/GTP-binding site motif A Tax=mine drainage metagenome RepID=T1CI37_9ZZZZ
ATP/GTP-binding site motif A {ECO:0000313|EMBL:EQD66124.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
LR_AMD_scaffold_4_5

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comp(4894..6117)
DNA (1224bp) protein (408aa)
Translation initiation factor IF-2 subunit gamma Tax=mine drainage metagenome RepID=T1CGE4_9ZZZZ
Translation initiation factor IF-2 subunit gamma {ECO:0000313|EMBL:EQD66125.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
translation initiation factor 2 subunit gamma
LR_AMD_scaffold_4_6

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comp(6114..6518)
DNA (405bp) protein (135aa)
Ribosomal protein S6e Tax=mine drainage metagenome RepID=T1AZX5_9ZZZZ
Ribosomal protein S6e {ECO:0000313|EMBL:EQD66126.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rps6e; 30D ribosomal protein S6E
LR_AMD_scaffold_4_7
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

Not on your lists

comp(6595..8751)
DNA (2157bp) protein (719aa)
AAA family ATPase protein (EC:3.6.4.6)
AAA family ATPase, CDC48 subfamily Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGB6_9EURY
AAA family ATPase, CDC48 subfamily {ECO:0000313|EMBL:EET90444.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
LR_AMD_scaffold_4_8
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

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comp(8923..9069)
DNA (147bp) protein (49aa)
Uncharacterized protein Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6W914_KINRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS03303.1}; species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
LR_AMD_scaffold_4_9

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9241..9630
DNA (390bp) protein (130aa)
Resolvase, Holliday junction-type Tax=mine drainage metagenome RepID=T1B8A2_9ZZZZ
Resolvase, Holliday junction-type {ECO:0000313|EMBL:EQD66107.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
holliday junction resolvase, archaea type
LR_AMD_scaffold_4_10

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9686..10321
DNA (636bp) protein (212aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1BCC5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD66108.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
LR_AMD_scaffold_4_11
Parcubacteria bacterium GW2011_GWA2_46_7, Parcubacteria, Bacteria

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comp(10329..10985)
DNA (657bp) protein (219aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU43564.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_46_7.;"
LR_AMD_scaffold_4_12
unknown

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comp(10993..11415)
DNA (423bp) protein (141aa)

This feature has no annotations

LR_AMD_scaffold_4_13
unknown

Not on your lists

comp(11569..11796)
DNA (228bp) protein (76aa)

This feature has no annotations

LR_AMD_scaffold_4_14
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(11793..12401)
DNA (609bp) protein (203aa)
Putative uncharacterized protein Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DH97_9EURY
Putative uncharacterized protein {ECO:0000313|EMBL:EET89999.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
hypothetical protein
LR_AMD_scaffold_4_15

Not on your lists

12716..14041
DNA (1326bp) protein (442aa)
DEXX-box atpase (Fragment) Tax=mine drainage metagenome RepID=T1BRJ5_9ZZZZ
DEXX-box atpase {ECO:0000313|EMBL:EQD56575.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Hypothetical protein
LR_AMD_scaffold_4_trna_3
unknown

Not on your lists

comp(14099..14173)
DNA (75bp)
transferRNA Glu
LR_AMD_scaffold_4_16

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14353..14889
DNA (537bp) protein (179aa)
Deoxycytidine triphosphate deaminase {ECO:0000313|EMBL:EQD56574.1}; EC=3.6.1.23 {ECO:0000313|EMBL:EQD56574.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Deoxycytidine triphosphate deaminase Tax=mine drainage metagenome RepID=T1BTR3_9ZZZZ
putative deoxycytidine triphosphate deaminase (dCTP deaminase)
LR_AMD_scaffold_4_17

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comp(14975..15262)
DNA (288bp) protein (96aa)
PRC-barrel domain protein Tax=mine drainage metagenome RepID=T1AJ83_9ZZZZ
PRC-barrel domain protein {ECO:0000313|EMBL:EQD56573.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
LR_AMD_scaffold_4_18

Not on your lists

15527..16672
DNA (1146bp) protein (382aa)
Transcription initiation factor TFB Tax=mine drainage metagenome RepID=T1AHC7_9ZZZZ
Transcription initiation factor TFB {ECO:0000313|EMBL:EQD56572.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transcription initiation factor TFIIB
LR_AMD_scaffold_4_19
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

Not on your lists

16678..17121
DNA (444bp) protein (148aa)
Putative uncharacterized protein Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHA5_9EURY
Putative uncharacterized protein {ECO:0000313|EMBL:EET90007.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
LR_AMD_scaffold_4_20

Not on your lists

17239..17478
DNA (240bp) protein (80aa)
Deoxyribonuclease/rho motif-related TRAM {ECO:0000313|EMBL:EQD56571.1}; EC=2.-.-.- {ECO:0000313|EMBL:EQD56571.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Deoxyribonuclease/rho motif-related TRAM Tax=mine drainage metagenome RepID=T1A7E4_9ZZZZ
LR_AMD_scaffold_4_21
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

Not on your lists

17693..18340
DNA (648bp) protein (216aa)
Proteasome subunit beta {ECO:0000256|HAMAP-Rule:MF_02113}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_02113};; 20S proteasome beta subunit {ECO:0000256|HAMAP-Rule:MF_02113}; Proteasome core protein PsmB {ECO:0000256|HAMAP-Rule:MF_02113}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
proteasome subunit beta (EC:3.4.25.1)
Proteasome subunit beta Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHA7_9EURY
LR_AMD_scaffold_4_22

Not on your lists

18438..20453
DNA (2016bp) protein (672aa)
mRNA 3'-end processing factor Tax=mine drainage metagenome RepID=T1A032_9ZZZZ
mRNA 3'-end processing factor {ECO:0000313|EMBL:EQD35155.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Cleavage and polyadenylation specficity factor subunit like protein
LR_AMD_scaffold_4_23

Not on your lists

comp(20464..21327)
DNA (864bp) protein (288aa)
LamG domain protein jellyroll fold domain protein (Fragment) Tax=mine drainage metagenome RepID=T1CC64_9ZZZZ
LamG domain protein jellyroll fold domain protein {ECO:0000313|EMBL:EQD64230.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
LR_AMD_scaffold_4_24

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comp(22080..23090)
DNA (1011bp) protein (337aa)
Uncharacterized protein (Fragment) Tax=mine drainage metagenome RepID=T1AKU6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD57098.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
LR_AMD_scaffold_4_25

Not on your lists

23259..25781
DNA (2523bp) protein (841aa)
Peptidase M1 membrane alanine aminopeptidase {ECO:0000313|EMBL:EQD44255.1}; EC=3.-.-.- {ECO:0000313|EMBL:EQD44255.1};; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Peptidase M1 membrane alanine aminopeptidase (Fragment) Tax=mine drainage metagenome RepID=T1AQC6_9ZZZZ
Peptidase M1 membrane alanine aminopeptidase
LR_AMD_scaffold_4_26

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25793..26908
DNA (1116bp) protein (372aa)
Glycosyl transferase family 2 {ECO:0000313|EMBL:EQD45997.1}; EC=2.-.-.- {ECO:0000313|EMBL:EQD45997.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
glycosyltransferase (EC:2.4.-.-)
Glycosyl transferase family 2 Tax=mine drainage metagenome RepID=T0ZND9_9ZZZZ
LR_AMD_scaffold_4_27

Not on your lists

27170..28900
DNA (1731bp) protein (577aa)
Threonyl-tRNA synthetase (Fragment) Tax=mine drainage metagenome RepID=T0ZPJ5_9ZZZZ
Threonyl-tRNA synthetase {ECO:0000313|EMBL:EQD50266.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
thrS; threonyl-tRNA synthetase
LR_AMD_scaffold_4_28
CG_Micra_01, Micraarchaeota, Archaea

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comp(28921..29139)
DNA (219bp) protein (73aa)
Tax=CG_Micra_01
Displaying items 1-30 of 58 in total

View Taxonomy