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Me_Mat_scaffold_3

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Displaying items 1-30 of 375 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Me_Mat_scaffold_3_1

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3..1418
DNA (1416bp) protein (472aa)
Uncharacterized protein (Fragment) Tax=mine drainage metagenome RepID=T0XT52_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD26006.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
psrP; Large surface exposed glycoprotein PsrP
Me_Mat_scaffold_3_2
unknown

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1429..2310
DNA (882bp) protein (294aa)

This feature has no annotations

Me_Mat_scaffold_3_3
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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2544..4433
DNA (1890bp) protein (630aa)
Radical SAM domain protein Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGH5_9EURY
Radical SAM domain protein {ECO:0000313|EMBL:EET90322.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
hypothetical protein
Me_Mat_scaffold_3_4
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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4519..5190
DNA (672bp) protein (224aa)
Putative uncharacterized protein Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGH6_9EURY
Putative uncharacterized protein {ECO:0000313|EMBL:EET90323.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
Me_Mat_scaffold_3_5
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(5271..6191)
DNA (921bp) protein (307aa)
ATPase associated with various cellular activities AAA_3 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGJ5_9EURY
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:EET90342.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
methanol dehydrogenase regulator
Me_Mat_scaffold_3_6
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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6420..6647
DNA (228bp) protein (76aa)
RNA polymerase Rpb5 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC7_9EURY
RNA polymerase Rpb5 {ECO:0000313|EMBL:EET90029.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
DNA-directed RNA polymerase subunit H
Me_Mat_scaffold_3_7
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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6693..8159
DNA (1467bp) protein (489aa)
rpoB; DNA-directed RNA polymerase subunit B (EC:2.7.7.6)
RNA polymerase beta subunit Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC6_9EURY
RNA polymerase beta subunit {ECO:0000313|EMBL:EET90028.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
Me_Mat_scaffold_3_8
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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8175..9998
DNA (1824bp) protein (608aa)
RNA polymerase Rpb2 domain 6 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC5_9EURY
RNA polymerase Rpb2 domain 6 {ECO:0000313|EMBL:EET90027.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
DNA-directed RNA polymerase subunit B'
Me_Mat_scaffold_3_9
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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10008..12545
DNA (2538bp) protein (846aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
DNA-directed RNA polymerase Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC4_9EURY
DNA-directed RNA polymerase subunit A'
Me_Mat_scaffold_3_10
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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12555..13628
DNA (1074bp) protein (358aa)
DNA-directed RNA polymerase, subunit a' (EC:2.7.7.6)
RNA polymerase Rpb1 domain 5 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC3_9EURY
RNA polymerase Rpb1 domain 5 {ECO:0000313|EMBL:EET90025.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
Me_Mat_scaffold_3_11
Acidiplasma sp. MBA-1, Acidiplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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13638..14768
DNA (1131bp) protein (377aa)
hypothetical protein Tax=euryarchaeote SCGC AAA261-G15 RepID=UPI00036EB5C0
Glycosyltransferase {ECO:0000313|EMBL:KJE48770.1}; species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Acidiplasma.;" source="Acidiplasma sp. MBA-1.;"
glycosyltransferase
Me_Mat_scaffold_3_12
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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14810..15034
DNA (225bp) protein (75aa)
Sm-family ribonucleoprotein Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC2_9EURY
Sm-family ribonucleoprotein {ECO:0000313|EMBL:EET90024.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
small nuclear ribonucleoprotein
Me_Mat_scaffold_3_trna_1
unknown

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15047..15120
DNA (74bp)
transferRNA Pseudo
Me_Mat_scaffold_3_13

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15275..15610
DNA (336bp) protein (112aa)
RNA polymerase Rpb4 (Fragment) Tax=mine drainage metagenome RepID=T1A0B4_9ZZZZ
RNA polymerase Rpb4 {ECO:0000313|EMBL:EQD35255.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Me_Mat_scaffold_3_14
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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15646..16233
DNA (588bp) protein (196aa)
Putative uncharacterized protein Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGJ3_9EURY
Putative uncharacterized protein {ECO:0000313|EMBL:EET90340.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
hypothetical protein
Me_Mat_scaffold_3_15
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(16325..16609)
DNA (285bp) protein (95aa)
Ribosomal protein L21e Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGJ2_9EURY
Ribosomal protein L21e {ECO:0000313|EMBL:EET90339.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
50S ribosomal protein L21
Me_Mat_scaffold_3_16
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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16716..17048
DNA (333bp) protein (111aa)
TATA-box binding family protein Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGJ1_9EURY
TATA-box binding family protein {ECO:0000313|EMBL:EET90338.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
transcription initiation factor TFIID TATA-box-binding protein
Me_Mat_scaffold_3_17
Thermoplasmatales archaeon Gpl, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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17058..17447
DNA (390bp) protein (130aa)
msrB; methionine sulfoxide reductase B (EC:1.8.4.12)
Peptide methionine sulfoxide reductase Tax=Thermoplasmatales archaeon Gpl RepID=T0LYQ4_9EURY
Peptide methionine sulfoxide reductase {ECO:0000313|EMBL:EQB69684.1}; species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; environmental samples.;" source="Thermoplasmatales archaeon Gpl.;"
Me_Mat_scaffold_3_18

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17452..17934
DNA (483bp) protein (161aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1A2U7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD51237.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
Me_Mat_scaffold_3_19
R_Deltaproteobacteria_40_11, Deltaproteobacteria, Proteobacteria, Bacteria

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17918..18352
DNA (435bp) protein (145aa)
Putative uncharacterized protein bin=GWA2_OP3_53_43 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_40_11_curated
Me_Mat_scaffold_3_20
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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18390..18683
DNA (294bp) protein (98aa)
Putative uncharacterized protein Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGB4_9EURY
Putative uncharacterized protein {ECO:0000313|EMBL:EET90442.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
Me_Mat_scaffold_3_21
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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18676..19050
DNA (375bp) protein (125aa)
Transcriptional regulator, PadR-like family Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGB3_9EURY
Transcriptional regulator, PadR-like family {ECO:0000313|EMBL:EET90441.1}; species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
PadR family transcriptional regulator
Me_Mat_scaffold_3_22
unknown

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comp(19105..19581)
DNA (477bp) protein (159aa)

This feature has no annotations

Me_Mat_scaffold_3_23
AR20, Woesearchaeaota, DPANN, Archaea

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comp(19716..20315)
DNA (600bp) protein (200aa)
hypothetical protein
id=5103217 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
Me_Mat_scaffold_3_24
R_RIF_OD1_12_45_17b, RIF-OD1-12, Parcubacteria, Bacteria

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20458..21054
DNA (597bp) protein (199aa)
Adenylyl cyclase CyaB bin=GWF1_WS6_37_7 species=WS6_GWF1_36_7 genus=WS6_GWF1_36_7 taxon_order=WS6_GWF1_36_7 taxon_class=WS6_GWF1_36_7 phylum=WS6 tax=GWF1_WS6_37_7 organism_group=WS6 (Doikabacteria)
adenylate cyclase
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_12_45_17b_curated
Me_Mat_scaffold_3_25
unknown

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21336..21812
DNA (477bp) protein (159aa)

This feature has no annotations

Me_Mat_scaffold_3_26
CG_Micra_01, Micraarchaeota, Archaea

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comp(21908..22222)
DNA (315bp) protein (105aa)
Tax=CG_Micra_01
Me_Mat_scaffold_3_27
RIFOXYD1_FULL_OP11_Collierbacteria_40_9_curated, Collierbacteria, Microgenomates, Bacteria

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comp(22219..22857)
DNA (639bp) protein (213aa)
Tax=RIFOXYD1_FULL_OP11_Collierbacteria_40_9_curated
Me_Mat_scaffold_3_28
CG_Micra_01, Micraarchaeota, Archaea

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comp(22955..23212)
DNA (258bp) protein (86aa)
hypothetical protein
Tax=CG_Micra_01
Me_Mat_scaffold_3_29
Vulcanisaeta moutnovskia, Vulcanisaeta, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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23455..24141
DNA (687bp) protein (229aa)
Uncharacterized protein Tax=Vulcanisaeta moutnovskia (strain 768-28) RepID=F0QYB5_VULM7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY01352.1}; species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Vulcanisaeta.;" source="Vulcanisaeta moutnovskia (strain 768-28).;"
Displaying items 1-30 of 375 in total

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