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RifSed_csp1_19ft_2_scaffold_35358

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_2_scaffold_35358_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2..253
DNA (252bp) protein (84aa)
JAMM-like protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XM15_METZD
Proteasome Rpn11 subunit JAMM motif {ECO:0000313|EMBL:KCZ73143.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
JAMM
RifSed_csp1_19ft_2_scaffold_35358_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(254..682)
DNA (429bp) protein (143aa)
Glycine cleavage system H protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8FBW9_9DELT
Probable glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
gcvH3; glycine cleavage system H protein 2
RifSed_csp1_19ft_2_scaffold_35358_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(727..1149)
DNA (423bp) protein (141aa)
Glycine cleavage system H protein n=1 Tax=Megamonas funiformis CAG:377 RepID=R6MEI5_9FIRM
Probable glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
glycine cleavage system H protein
RifSed_csp1_19ft_2_scaffold_35358_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1203..1688
DNA (486bp) protein (162aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72744.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_35358_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1669..2238)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L0U7_9BACT
Peptidase family M23 {ECO:0000313|EMBL:KCZ70983.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
peptidase family M23
RifSed_csp1_19ft_2_scaffold_35358_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(2421..3365)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Aquifex aeolicus (strain VF5) RepID=O66721_AQUAE
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_35358_7
unknown

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3451..3594
DNA (144bp) protein (48aa)

This feature has no annotations

RifSed_csp1_19ft_2_scaffold_35358_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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3591..3953
DNA (363bp) protein (121aa)
50S ribosomal protein L18e n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZF3_METFV
50S ribosomal protein L18ae
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_35358_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3958..4224
DNA (267bp) protein (89aa)
50S ribosomal protein L13 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MLL7_9EURY
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LSU ribosomal protein L13P
RifSed_csp1_19ft_2_scaffold_35358_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


4387..4785
DNA (399bp) protein (133aa)
30S ribosomal protein S9 n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E7A2_METMS
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003817}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
30S ribosomal protein S9P
RifSed_csp1_19ft_2_scaffold_35358_trna_1
unknown

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4977..5051
DNA (75bp)
transferRNA Pro
RifSed_csp1_19ft_2_scaffold_35358_11
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5174..5371
DNA (198bp) protein (66aa)
rpoK; DNA-directed RNA polymerase subunit K (EC:2.7.7.6)
DNA-directed RNA polymerase subunit K n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IB04_METCZ
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp1_19ft_2_scaffold_35358_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


5381..6007
DNA (627bp) protein (209aa)
30S ribosomal protein S2 n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WLX6_METH6
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291, ECO:0000256|SAAS:SAAS00012212}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
30S ribosomal protein S2P
RifSed_csp1_19ft_2_scaffold_35358_13
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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6014..6487
DNA (474bp) protein (158aa)
MEMO1 family protein MM_1761 n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Y1761_METMA
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_35358_14
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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6753..7496
DNA (744bp) protein (248aa)
Putative uncharacterized protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAK5_METMS
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_35358_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7501..7890
DNA (390bp) protein (130aa)
Putative uncharacterized protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAK6_METMS
Uncharacterized protein {ECO:0000313|EMBL:KCZ72070.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp1_19ft_2_scaffold_35358_16
unknown

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comp(7898..8374)
DNA (477bp) protein (159aa)

This feature has no annotations

RifSed_csp1_19ft_2_scaffold_35358_17
unknown

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comp(8447..8545)
DNA (99bp) protein (33aa)

This feature has no annotations

RifSed_csp1_19ft_2_scaffold_35358_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8844..9035)
DNA (192bp) protein (64aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72072.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_35358_19
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(9116..9910)
DNA (795bp) protein (265aa)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KTV2_METHD rbh
dihydrodipicolinate reductase rbh
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_35358_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9917..10162)
DNA (246bp) protein (82aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=Methanosarcina mazei RepID=DAPA_METMA
Dihydrodipicolinate synthase
Displaying 21 items

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