ggKbase home page

RifSed_csp1_19ft_2_scaffold_45802

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_2_scaffold_45802_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


3..152
DNA (150bp) protein (50aa)
50S ribosomal protein L2 n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J0RY23_9EURY
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rpl2p; 50S ribosomal protein L2P
RifSed_csp1_19ft_2_scaffold_45802_2

Not on your lists


156..569
DNA (414bp) protein (138aa)
30S ribosomal protein S19P n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E6S3_METMS
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S19P
RifSed_csp1_19ft_2_scaffold_45802_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


575..1021
DNA (447bp) protein (149aa)
50S ribosomal protein L22P n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XLU0_METZD
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004007}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
50S ribosomal protein L22
RifSed_csp1_19ft_2_scaffold_45802_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


1021..1752
DNA (732bp) protein (244aa)
30S ribosomal protein S3 n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8S9_METEZ
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
30S ribosomal protein S3
RifSed_csp1_19ft_2_scaffold_45802_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


1752..1955
DNA (204bp) protein (68aa)
50S ribosomal protein L29P n=1 Tax=Methanohalophilus portucalensis RepID=A5JHC9_9EURY
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
50S ribosomal protein L29P
RifSed_csp1_19ft_2_scaffold_45802_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1952..2263
DNA (312bp) protein (104aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|HAMAP-Rule:MF_00754}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ribonuclease P protein component 1 n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1PYU7_METMZ
Ribonuclease P protein component 1
RifSed_csp1_19ft_2_scaffold_45802_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


2278..2547
DNA (270bp) protein (90aa)
30S ribosomal protein S17P n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZS4_METHD
Archaeal ribosomal protein S17P {ECO:0000313|EMBL:KCZ73299.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
archaeal ribosomal protein S17P
RifSed_csp1_19ft_2_scaffold_45802_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


2544..2942
DNA (399bp) protein (133aa)
50S ribosomal protein L14 n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BZV3_METCG
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rplN; 50S ribosomal protein L14b/L23e
RifSed_csp1_19ft_2_scaffold_45802_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


2952..3293
DNA (342bp) protein (114aa)
50S ribosomal protein L24P n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=RL24_METBF
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LSU ribosomal protein L24P
RifSed_csp1_19ft_2_scaffold_45802_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3294..3986
DNA (693bp) protein (231aa)
30S ribosomal protein S4e n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MD48_9EURY
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
30S ribosomal protein S4e
RifSed_csp1_19ft_2_scaffold_45802_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


3986..4492
DNA (507bp) protein (169aa)
50S ribosomal protein L5 n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E6R4_METMS
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
50S ribosomal protein L5P
RifSed_csp1_19ft_2_scaffold_45802_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


4493..4645
DNA (153bp) protein (51aa)
30S ribosomal protein S14 type Z n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W1X4_UNCMA
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rps14p; 30S ribosomal protein S14P
RifSed_csp1_19ft_2_scaffold_45802_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


4655..5044
DNA (390bp) protein (130aa)
30S ribosomal protein S8 n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMP8_METZD
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
30S ribosomal protein S8
RifSed_csp1_19ft_2_scaffold_45802_14
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists


5054..5584
DNA (531bp) protein (177aa)
UPI0003D1C1F2 related cluster n=1 Tax=unknown RepID=UPI0003D1C1F2
LSU ribosomal protein L9e (L6p)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_45802_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

5590..5946
DNA (357bp) protein (119aa)
50S ribosomal protein L32e n=1 Tax=Natronorubrum sulfidifaciens JCM 14089 RepID=L9WFD1_9EURY
50S ribosomal protein L32e
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 15 items

View Taxonomy