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RifSed_csp1_16ft_2_scaffold_28477

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_16ft_2_scaffold_28477_1
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1..699)
DNA (699bp) protein (233aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase Tax=Methanosarcina mazei RepID=Q8PUW2_METMA
Glucose-1-phosphate thymidylyltransferase {ECO:0000313|EMBL:AGF97589.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei Tuc01.;"
RifSed_csp1_16ft_2_scaffold_28477_2
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(696..1517)
DNA (822bp) protein (274aa)
dTDP-4-dehydrorhamnose reductase Tax=Methanosarcina mazei RepID=M1P847_METMZ
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:KKG99378.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei (Methanosarcina frisia).;"
dTDP-4-dehydrorhamnose reductase
RifSed_csp1_16ft_2_scaffold_28477_3
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1490..2086)
DNA (597bp) protein (199aa)
dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:AKB33552.1}; EC=4.2.1.46 {ECO:0000313|EMBL:AKB33552.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina siciliae HI350.;"
rfbB-1; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W7G2_UNCMA
RifSed_csp1_16ft_2_scaffold_28477_4
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2113..2619)
DNA (507bp) protein (169aa)
rfbC; dTDP-4-dehydrorhamnose 3,5 epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5 epimerase {ECO:0000313|EMBL:CAJ35682.1}; EC=5.1.3.13 {ECO:0000313|EMBL:CAJ35682.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
dTDP-4-dehydrorhamnose 3,5 epimerase Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W7G1_UNCMA
RifSed_csp1_16ft_2_scaffold_28477_5
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

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2737..3750
DNA (1014bp) protein (338aa)
Putative glycosyltransferase Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I6Q2_METCZ
glycosyltransferase
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
RifSed_csp1_16ft_2_scaffold_28477_6

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comp(3751..4644)
DNA (894bp) protein (298aa)
rhamnosyltransferase (EC:2.4.1.-)
Conserved protein Tax=Methanosarcina mazei Go1 RepID=Q8PUW1_METMA bin=RBG2 species=Methanosarcina mazei genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=RBG2 organism_group=Chloroflexi
Marine sediment metagenome DNA, contig: S01H4_C00806 {ECO:0000313|EMBL:GAG56776.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
RifSed_csp1_16ft_2_scaffold_28477_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(4641..5777)
DNA (1137bp) protein (379aa)
Conserved hypothetical membrane protein, glycosyl transferase family 2 Tax=uncultured archaeon RepID=Q2Y4J7_9ARCH
Glycosyl transferase {ECO:0000313|EMBL:KCZ73006.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
dolichol-P-glucose synthetase, putative
RifSed_csp1_16ft_2_scaffold_28477_8
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5970..6386
DNA (417bp) protein (139aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
Displaying 8 items

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