ggKbase home page

RifSed_csp1_16ft_2_scaffold_11748

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_16ft_2_scaffold_11748_1
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2..853)
DNA (852bp) protein (284aa)
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase Tax=uncultured bacterium (gcode 4) RepID=K1YB13_9BACT
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp1_16ft_2_scaffold_11748_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

873..1544
DNA (672bp) protein (224aa)
Ribonuclease P protein component 3 {ECO:0000256|HAMAP-Rule:MF_00756}; Short=RNase P component 3 {ECO:0000256|HAMAP-Rule:MF_00756};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00756};; Rpp30 {ECO:0000256|HAMAP-Rule:MF_00756}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ribonuclease P protein component 3 (EC:3.1.26.5)
Ribonuclease P protein component 3 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=RNP3_METBU
RifSed_csp1_16ft_2_scaffold_11748_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

1541..1897
DNA (357bp) protein (119aa)
Ribonuclease P protein component 2 Tax=uncultured archaeon RepID=D1JE00_9ARCH
ribonuclease P
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_16ft_2_scaffold_11748_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1940..2713
DNA (774bp) protein (258aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PsmA {ECO:0000256|HAMAP-Rule:MF_00289}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Proteasome subunit alpha, archaeal (EC:3.4.25.1)
Proteasome subunit alpha Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=PSA_METBF
RifSed_csp1_16ft_2_scaffold_11748_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


2720..3415
DNA (696bp) protein (232aa)
Shwachman-Bodian-Diamond syndrome protein Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B8W5_METTP
rRNA metabolism protein, SBDS family {ECO:0000313|EMBL:KCZ70726.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative RNA-associated protein
RifSed_csp1_16ft_2_scaffold_11748_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3422..4216
DNA (795bp) protein (265aa)
Exosome complex component Rrp4 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B8W4_METTP
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
exosome complex RNA-binding protein Rrp4
RifSed_csp1_16ft_2_scaffold_11748_7
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

4213..4944
DNA (732bp) protein (244aa)
rrp41p; putative exosome complex exonuclease 1 (EC:3.1.13.-)
Exosome complex component Rrp41 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W2Y8_UNCMA
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_16ft_2_scaffold_11748_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

4931..5716
DNA (786bp) protein (262aa)
rrp42p; exosome complex RNA-binding protein Rrp42 (EC:3.1.13.-)
Exosome complex component Rrp42 Tax=Uncultured methanogenic archaeon RC-I RepID=RRP42_UNCMA
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_16ft_2_scaffold_11748_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5719..6015
DNA (297bp) protein (99aa)
50S ribosomal protein L37Ae Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12ZB5_METBU
50S ribosomal protein L37Ae {ECO:0000256|HAMAP-Rule:MF_00327}; Ribosomal protein L43e {ECO:0000256|HAMAP-Rule:MF_00327}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rpl37ae; 50S ribosomal protein L37Ae
RifSed_csp1_16ft_2_scaffold_11748_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

6159..6587
DNA (429bp) protein (143aa)
Probable Brix domain-containing ribosomal biogenesis protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8G1_METEZ
Brix domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_16ft_2_scaffold_11748_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6580..7170
DNA (591bp) protein (197aa)
Uncharacterized protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8N6_METEZ
Uncharacterized protein {ECO:0000313|EMBL:KCZ70719.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
Displaying 11 items

View Taxonomy