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RifSed_csp2_16ft_3_scaffold_513

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_513_1
unknown

Not on your lists

144..287
DNA (144bp) protein (48aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_513_2
unknown

Not on your lists

274..678
DNA (405bp) protein (135aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_513_3
unknown

Not on your lists

comp(956..1117)
DNA (162bp) protein (54aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_513_4
unknown

Not on your lists

1223..1315
DNA (93bp) protein (31aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_513_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

1365..2915
DNA (1551bp) protein (517aa)
NAD(P)-binding domain-containing protein Tax=Dehalococcoides mccartyi BTF08 RepID=M1Q496_9CHLR
NAD(P)-binding domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_513_6
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

2884..3459
DNA (576bp) protein (192aa)
UPI00020A9BE3 related cluster bin=GWF2_Ignavibacteria_35_20 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
CoA-binding protein
Tax=CG_Anaero_02
RifSed_csp2_16ft_3_scaffold_513_7
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3525..3977)
DNA (453bp) protein (151aa)
Ribonuclease VapC Tax=Thermofilum pendens (strain Hrk 5) RepID=A1S094_THEPD
PilT domain-containing protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_513_8
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3974..4234)
DNA (261bp) protein (87aa)
looped-hinge helix DNA binding protein domain protein, AbrB family
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_513_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4368..4880)
DNA (513bp) protein (171aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71812.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_513_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4834..5490)
DNA (657bp) protein (219aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71812.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_513_11
unknown

Not on your lists

5774..6304
DNA (531bp) protein (177aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_513_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

6451..6960
DNA (510bp) protein (170aa)
Flavodoxin Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TPV5_METAC
flavodoxin
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_513_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7299..7727)
DNA (429bp) protein (143aa)
Transcriptional regulator, TrmB Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B7K3_METTP
Putative transcriptional regulator {ECO:0000313|EMBL:KCZ71000.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
transcriptional regulator, TrmB
RifSed_csp2_16ft_3_scaffold_513_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8228..8803)
DNA (576bp) protein (192aa)
Uncharacterized protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMU1_METZD
Leucyl aminopeptidase (Aminopeptidase T) {ECO:0000313|EMBL:KCZ70354.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_513_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8807..10075)
DNA (1269bp) protein (423aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
3-isopropylmalate dehydratase large subunit Tax=Methanolobus psychrophilus R15 RepID=K4MEK4_9EURY
3-isopropylmalate dehydratase, large subunit
RifSed_csp2_16ft_3_scaffold_513_16
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(10117..11013)
DNA (897bp) protein (299aa)
UPI0003D1C20A related cluster Tax=unknown RepID=UPI0003D1C20A
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_513_17
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(11047..11826)
DNA (780bp) protein (260aa)
Putative PAS/PAC sensor protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3D7_GEOUR
putative PAS/PAC sensor protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_513_18

Not on your lists

comp(11823..13628)
DNA (1806bp) protein (602aa)
Predicted signal transduction histidine kinase Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W8Y7_UNCMA
Uncharacterized protein {ECO:0000313|EMBL:KKM85796.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
signal transduction histidine kinase
RifSed_csp2_16ft_3_scaffold_513_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13742..14548
DNA (807bp) protein (269aa)
Prephenate dehydratase {ECO:0000313|EMBL:KCZ71481.1}; EC=4.2.1.51 {ECO:0000313|EMBL:KCZ71481.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
prephenate dehydratase (EC:4.2.1.51)
Prephenate dehydratase Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E6W6_METEZ
RifSed_csp2_16ft_3_scaffold_513_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14606..15253
DNA (648bp) protein (216aa)
Riboflavin kinase {ECO:0000256|HAMAP-Rule:MF_01285}; Short=RFK {ECO:0000256|HAMAP-Rule:MF_01285};; EC=2.7.1.161 {ECO:0000256|HAMAP-Rule:MF_01285};; CTP-dependent riboflavin kinase {ECO:0000256|HAMAP-Rule:MF_01285}; CTP:riboflavin 5'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01285}; Flavokinase {ECO:0000256|HAMAP-Rule:MF_01285}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
CTP-dependent riboflavin kinase (EC:2.7.1.161)
CTP-dependent riboflavin kinase Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XKT7_METZD
RifSed_csp2_16ft_3_scaffold_513_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15250..15948
DNA (699bp) protein (233aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|RuleBase:RU003843}; Short=DHBP synthase {ECO:0000256|RuleBase:RU003843};; EC=4.1.99.12 {ECO:0000256|RuleBase:RU003843};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EAM9_METEZ
3,4-dihydroxy-2-butanone 4-phosphate synthase
RifSed_csp2_16ft_3_scaffold_513_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15994..16368)
DNA (375bp) protein (125aa)
Transcriptional regulator, TrmB Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B7K3_METTP
Putative transcriptional regulator {ECO:0000313|EMBL:KCZ71478.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
transcriptional regulator, TrmB
RifSed_csp2_16ft_3_scaffold_513_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16665..17537
DNA (873bp) protein (291aa)
Branched-chain amino acid aminotransferase, group I {ECO:0000313|EMBL:KCZ71477.1}; EC=2.6.1.42 {ECO:0000313|EMBL:KCZ71477.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EA45_METEZ
RifSed_csp2_16ft_3_scaffold_513_24
unknown

Not on your lists

17974..18153
DNA (180bp) protein (60aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_513_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

18192..18347
DNA (156bp) protein (52aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72716.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_513_26
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(18469..18981)
DNA (513bp) protein (171aa)
Nicotinamide-nucleotide adenylyltransferase Tax=Methanolobus tindarius RepID=NADM_METTI
cytidylyltransferase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_513_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18983..20356)
DNA (1374bp) protein (458aa)
Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XN91_METZD
Coenzyme F420-reducing hydrogenase, beta subunit {ECO:0000313|EMBL:KCZ71525.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
coenzyme F420 hydrogenase/dehydrogenase subunit beta domain-containing protein
RifSed_csp2_16ft_3_scaffold_513_28
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(20358..21338)
DNA (981bp) protein (327aa)
5,10-methylenetetrahydromethanopterin reductase {ECO:0000256|HAMAP-Rule:MF_01091}; EC=1.5.98.2 {ECO:0000256|HAMAP-Rule:MF_01091};; Coenzyme F420-dependent N(5),N(10)-methylenetetrahydromethanopterin reductase {ECO:0000256|HAMAP-Rule:MF_01091}; Methylene-H(4)MPT reductase {ECO:0000256|HAMAP-Rule:MF_01091}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
5,10-methylenetetrahydromethanopterin reductase Tax=Methanolobus psychrophilus R15 RepID=K4MQS9_9EURY
5,10-methylenetetrahydromethanopterin reductase
RifSed_csp2_16ft_3_scaffold_513_29
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21414..22037)
DNA (624bp) protein (208aa)
Uncharacterized protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E5U9_METEZ
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_513_30
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

22097..22840
DNA (744bp) protein (248aa)
Formate dehydrogenase family accessory protein FdhD Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XP59_METZD
Formate dehydrogenase family accessory protein FdhD {ECO:0000313|EMBL:KCZ72185.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
formate dehydrogenase family accessory protein FdhD
Displaying items 1-30 of 56 in total

View Taxonomy