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RifSed_csp2_16ft_3_scaffold_3031

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_3031_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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271..1353
DNA (1083bp) protein (361aa)
Arabinose efflux permease family protein Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KYZ0_METHD
Arabinose efflux permease family protein {ECO:0000313|EMBL:KCZ71487.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
arabinose efflux permease family protein
RifSed_csp2_16ft_3_scaffold_3031_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1319..1882)
DNA (564bp) protein (188aa)
GMP synthase [glutamine-hydrolyzing] subunit A {ECO:0000256|HAMAP-Rule:MF_01510}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_01510};; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_01510}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
guaA; GMP synthase subunit A (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] subunit A Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=GUAAA_METAC
RifSed_csp2_16ft_3_scaffold_3031_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1888..2073)
DNA (186bp) protein (62aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71485.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_3031_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2115..3683)
DNA (1569bp) protein (523aa)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KCZ72990.1}; EC=1.1.1.95 {ECO:0000313|EMBL:KCZ72990.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XLP8_METZD
RifSed_csp2_16ft_3_scaffold_3031_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3790..4371
DNA (582bp) protein (194aa)
tRNA (pseudouridine(54)-N(1))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00587}; EC=2.1.1.257 {ECO:0000256|HAMAP-Rule:MF_00587};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1C2A8 related cluster Tax=unknown RepID=UPI0003D1C2A8
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3031_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4389..5624
DNA (1236bp) protein (412aa)
tRNA pseudouridine synthase Pus10 {ECO:0000256|HAMAP-Rule:MF_01893}; EC=5.4.99.- {ECO:0000256|HAMAP-Rule:MF_01893};; tRNA pseudouridine 54/55 synthase {ECO:0000256|HAMAP-Rule:MF_01893}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
tRNA pseudouridine synthase Pus10 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XN18_METZD
THUMP domain-containing protein
RifSed_csp2_16ft_3_scaffold_3031_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5651..5941
DNA (291bp) protein (97aa)
UPI0003D1A9DC related cluster Tax=unknown RepID=UPI0003D1A9DC
50S ribosomal protein L21e {ECO:0000256|HAMAP-Rule:MF_00369, ECO:0000256|SAAS:SAAS00016423}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ribosomal protein L21E
RifSed_csp2_16ft_3_scaffold_3031_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5953..6303
DNA (351bp) protein (117aa)
Uncharacterized protein conserved in archaea {ECO:0000313|EMBL:KCZ72915.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KCZ72915.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1B0D0 related cluster Tax=unknown RepID=UPI0003D1B0D0
RNA polymerase Rpb4
RifSed_csp2_16ft_3_scaffold_3031_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6381..6971
DNA (591bp) protein (197aa)
Putative RNA-binding protein Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KYB4_METHD
Putative RNA-binding protein {ECO:0000313|EMBL:KCZ72914.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative RNA-binding protein
RifSed_csp2_16ft_3_scaffold_3031_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6975..7739
DNA (765bp) protein (255aa)
Probable ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
dimethyladenosine transferase (EC:2.1.1.48)
Probable ribosomal RNA small subunit methyltransferase A Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XN14_METZD
RifSed_csp2_16ft_3_scaffold_3031_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7742..8524)
DNA (783bp) protein (261aa)
Flp pilus assembly protein, protease CpaA {ECO:0000313|EMBL:KCZ72904.1}; EC=3.4.23.52 {ECO:0000313|EMBL:KCZ72904.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Peptidase A24B, FlaK domain protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNZ8_METZD
Peptidase A24B, FlaK domain-containing protein
RifSed_csp2_16ft_3_scaffold_3031_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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8623..8862
DNA (240bp) protein (80aa)
Putative uncharacterized protein bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3031_13
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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8930..10567
DNA (1638bp) protein (546aa)
Putative transmembrane transporter Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AM81_9BACT
binding-protein-dependent transport system inner membrane protein
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp2_16ft_3_scaffold_3031_14
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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10569..11306
DNA (738bp) protein (246aa)
ABC transporter related protein Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RLE9_MOOTA
ABC transporter
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp2_16ft_3_scaffold_3031_15

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11306..11785
DNA (480bp) protein (160aa)
ABC transporter ATP-binding protein Tax=mine drainage metagenome RepID=T0Z1P1_9ZZZZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EQD39163.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ABC transporter ATPase
RifSed_csp2_16ft_3_scaffold_3031_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(11789..12943)
DNA (1155bp) protein (385aa)
ATP-utilizing enzymes of ATP-grasp superfamily (Probably carboligase) {ECO:0000313|EMBL:KCZ73194.1}; EC=6.3.4.- {ECO:0000313|EMBL:KCZ73194.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
5-formaminoimidazole-4-carboxamide-1-(Beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein Tax=Methanolobus psychrophilus R15 RepID=K4MLW3_9EURY
purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
RifSed_csp2_16ft_3_scaffold_3031_17
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(12967..13614)
DNA (648bp) protein (216aa)
Uncharacterized protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSQ0_METAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM04185.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /; C2A).;"
RifSed_csp2_16ft_3_scaffold_3031_18
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(13753..14736)
DNA (984bp) protein (328aa)
alcohol dehydrogenase Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B74ACC
theronine dehydrogenase-like Zn-dependent dehydrogenase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_3031_19
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14746..15525)
DNA (780bp) protein (260aa)
lsrF; putative aldolase LsrF (EC:4.1.2.-)
fructose-bisphosphate aldolase Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B7BA39
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_3031_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15814..17556)
DNA (1743bp) protein (581aa)
Aldehyde:ferredoxin oxidoreductase {ECO:0000313|EMBL:KCZ70428.1}; EC=1.2.7.5 {ECO:0000313|EMBL:KCZ70428.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Aldehyde:ferredoxin oxidoreductase Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HMP4_ACIS0
aldehyde:ferredoxin oxidoreductase
RifSed_csp2_16ft_3_scaffold_3031_21
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(17570..18529)
DNA (960bp) protein (320aa)
Protease HtpX homolog bin=GWB2_CP_45_9 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
htpX; heat shock protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3031_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18553..19233)
DNA (681bp) protein (227aa)
Uncharacterized protein Tax=Methanolobus psychrophilus R15 RepID=K4MFS4_9EURY
Zn-dependent protease with chaperone function {ECO:0000313|EMBL:KCZ70997.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3031_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(19230..19589)
DNA (360bp) protein (120aa)
Transcriptional repressor, CopY family Tax=Methanolobus psychrophilus R15 RepID=K4MI73_9EURY
Putative transcriptional regulator {ECO:0000313|EMBL:KCZ70996.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
transcriptional repressor, CopY family
RifSed_csp2_16ft_3_scaffold_3031_24

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20109..20759
DNA (651bp) protein (217aa)
Putative uncharacterized protein Tax=uncultured archaeon GZfos27E6 RepID=Q64BD2_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:AAU83295.1}; species="Archaea; environmental samples.;" source="uncultured archaeon GZfos27E6.;"
transposase
RifSed_csp2_16ft_3_scaffold_3031_25

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20786..21517
DNA (732bp) protein (244aa)
Putative uncharacterized protein Tax=uncultured archaeon GZfos28G7 RepID=Q64AX9_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:AAU83448.1}; species="Archaea; environmental samples.;" source="uncultured archaeon GZfos28G7.;"
Displaying 25 items

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