ggKbase home page

RifSed_csp2_16ft_3_scaffold_1440_21

Organism: RifSed_csp2_16ft_3_Methanoperedens_45_12

near complete RP 32 / 55 MC: 3 BSCG 28 / 51 ASCG 37 / 38 MC: 1
Location: 17635..18147

Top 3 Functional Annotations

Value Algorithm Source
Transcription factor E Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XM95_METZD similarity UNIREF
DB: UNIREF100
  • Identity: 59.3
  • Coverage: 162.0
  • Bit_score: 209
  • Evalue 2.30e-51
Transcription factor E {ECO:0000256|HAMAP-Rule:MF_01909, ECO:0000256|SAAS:SAAS00008967}; Short=TFE {ECO:0000256|HAMAP-Rule:MF_01909};; TFIIE subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01909}; Transcription initiation factor TFIIE {ECO:0000256|HAMAP-Rule:MF_01909}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.5
  • Coverage: 168.0
  • Bit_score: 282
  • Evalue 3.10e-73
transcription factor TFIIE subunit alpha similarity KEGG
DB: KEGG
  • Identity: 59.3
  • Coverage: 162.0
  • Bit_score: 209
  • Evalue 6.60e-52

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Methanoperedens nitroreducens → Candidatus Methanoperedens → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 513
TTGGTTGATATAAACGATCCTGTCGTTAAAGGCTATTTCATAAATCTTGTCGGTGAGGAGGGTTTCAAAGTGGTTCAAAAGATGCCCATGGAAGAGGTCACGGATGAAAAGATCTCAGAGGTGACAGGCGTTTTATTGAATATCGTGAGAAGGACTCTGTTCATATTATACGAGAACAGGCTTGCGGTCTATCGAAGAGTGCGGGACACGGACAGTGGCTGGCTCACATATTTATGGAAGCTTGATCTTGGTAACTTGAATGCCCAGCTTGAACTTGAAGCAAAAAAGGTCTTAAGAAACCTCAAGGTCAAGCTTGAATTTGAGGAAGGGAAAGTGTTCTATACCTGCAAAAATCAATGCAACCGCTACCTTTTTGAATACGCGACAGAACTGGAATTCATATGCCCCATATGTGATGAGAAACTTGAATATCAGGATAATGATATTATAATAAATGCCCTCAAAAGAAGGATCCTGGAACTTGAAGCTTTAACTTCGGGTGTTCCTGCTTGA
PROTEIN sequence
Length: 171
LVDINDPVVKGYFINLVGEEGFKVVQKMPMEEVTDEKISEVTGVLLNIVRRTLFILYENRLAVYRRVRDTDSGWLTYLWKLDLGNLNAQLELEAKKVLRNLKVKLEFEEGKVFYTCKNQCNRYLFEYATELEFICPICDEKLEYQDNDIIINALKRRILELEALTSGVPA*