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RifSed_csp2_16ft_3_scaffold_1440

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_1440_1
RBG_16_Chloroflexi_58_8_curated, Chloroflexi, Bacteria

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3..575
DNA (573bp) protein (191aa)
Dipeptide/oligopeptide/nickel ABC transporter periplasmic substrate-binding protein Tax=Haloferax mucosum ATCC BAA-1512 RepID=M0I6N5_9EURY
Tax=RBG_16_Chloroflexi_58_8_curated
RifSed_csp2_16ft_3_scaffold_1440_2
RBG_13_Chloroflexi_48_17_curated, Chloroflexi, Bacteria

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572..1531
DNA (960bp) protein (320aa)
Dipeptide/oligopeptide/nickel ABC transporter permease Tax=Halobiforma nitratireducens JCM 10879 RepID=M0LGG3_9EURY
dppB3; dipeptide/oligopeptide/nickel ABC transporter permease
Tax=RBG_13_Chloroflexi_48_17_curated
RifSed_csp2_16ft_3_scaffold_1440_3
RBG_13_Chloroflexi_48_17_curated, Chloroflexi, Bacteria

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1536..2438
DNA (903bp) protein (301aa)
Binding-protein-dependent transport system inner membrane protein Tax=Halobiforma nitratireducens JCM 10879 RepID=M0LF78_9EURY
binding-protein-dependent transport system inner membrane protein
Tax=RBG_13_Chloroflexi_48_17_curated
RifSed_csp2_16ft_3_scaffold_1440_4
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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2439..3404
DNA (966bp) protein (322aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit bin=GWC2_Tenericute_34_14 species=Ilyobacter polytropus genus=Ilyobacter taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWC2_Tenericute_34_14 organism_group=Tenericutes organism_desc=Good +
oligopeptide/dipeptide ABC transporter ATPase
Tax=RBG_16_Chloroflexi_50_9_curated
RifSed_csp2_16ft_3_scaffold_1440_5
RBG_16_Chloroflexi_58_8_curated, Chloroflexi, Bacteria

Not on your lists

3405..4361
DNA (957bp) protein (319aa)
ABC transporter, ATP-binding protein Tax=Filifactor alocis (strain ATCC 35896 / D40 B5) RepID=D6GQ30_FILAD
oligopeptide/dipeptide ABC transporter ATP-binding protein
Tax=RBG_16_Chloroflexi_58_8_curated
RifSed_csp2_16ft_3_scaffold_1440_6
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

4831..5199
DNA (369bp) protein (123aa)
hypothetical protein Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037F5DCB
phosphodiesterase MJ0936 family
Tax=CG_Arma_01
RifSed_csp2_16ft_3_scaffold_1440_7
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5620..6543)
DNA (924bp) protein (308aa)
Uncharacterized protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TNZ4_METAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM05531.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /; C2A).;"
RifSed_csp2_16ft_3_scaffold_1440_8
CG_Micra_05, Micraarchaeota, Archaea

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7000..7530
DNA (531bp) protein (177aa)
membrane protein Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B3B582
hypothetical protein
Tax=CG_Micra_05
RifSed_csp2_16ft_3_scaffold_1440_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7540..8865)
DNA (1326bp) protein (442aa)
Putative uncharacterized protein Tax=uncultured archaeon RepID=D1JEL4_9ARCH
Tetratricopeptide repeat protein {ECO:0000313|EMBL:KCZ72518.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
TPR repeats containing protein
RifSed_csp2_16ft_3_scaffold_1440_10
unknown

Not on your lists

comp(8867..9049)
DNA (183bp) protein (61aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_1440_11
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(9116..9508)
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=Methanobacterium formicicum DSM 3637 RepID=K2R0U1_METFO
PIN domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_1440_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(9505..9732)
DNA (228bp) protein (76aa)
Transcriptional regulator AbrB family protein Tax=Methanobacterium formicicum DSM 3637 RepID=K2QX09_METFO
AbrB family transcriptional regulator
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_1440_13
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9969..11891
DNA (1923bp) protein (641aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI000360EFB6
putative signal transduction histidine kinase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_1440_14
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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11891..12688
DNA (798bp) protein (266aa)
Putative PAS/PAC sensor protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQK1_METZD
putative PAS/PAC sensor protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_1440_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

12752..13456
DNA (705bp) protein (235aa)
RecA-superfamily ATPase implicated in signal transduction Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E7T7_METMS
RecA-superfamily ATPase implicated in signal transduction
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_1440_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13466..14293)
DNA (828bp) protein (276aa)
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:KCZ70656.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
type 11 methyltransferase bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=bin1_lowGC organism_group=Unknown_CP
type 11 methyltransferase
RifSed_csp2_16ft_3_scaffold_1440_17
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(14307..14576)
DNA (270bp) protein (90aa)
Transcriptional regulator, AbrB family bin=GWB2_Proteobacteria_55_19 species=Methanosaeta concilii genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
AbrB family transcriptional regulator
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_1440_18
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14802..15974
DNA (1173bp) protein (391aa)
RNA-metabolising metallo-beta-lactamase Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XK99_METZD
RNA-metabolising metallo-beta-lactamase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_1440_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15971..16498
DNA (528bp) protein (176aa)
tRNA (cytidine(56)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00077}; EC=2.1.1.206 {ECO:0000256|HAMAP-Rule:MF_00077};; tRNA ribose 2'-O-methyltransferase aTrm56 {ECO:0000256|HAMAP-Rule:MF_00077}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
tRNA (cytidine(56)-2'-O)-methyltransferase Tax=Methanolobus psychrophilus R15 RepID=K4M777_9EURY
protein of unknown function DUF127
RifSed_csp2_16ft_3_scaffold_1440_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16495..17598
DNA (1104bp) protein (368aa)
Uncharacterized protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46G11_METBF
Putative ATP-dependent carboligase {ECO:0000313|EMBL:KCZ70652.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_1440_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17635..18147
DNA (513bp) protein (171aa)
Transcription factor E Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XM95_METZD
Transcription factor E {ECO:0000256|HAMAP-Rule:MF_01909, ECO:0000256|SAAS:SAAS00008967}; Short=TFE {ECO:0000256|HAMAP-Rule:MF_01909};; TFIIE subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01909}; Transcription initiation factor TFIIE {ECO:0000256|HAMAP-Rule:MF_01909}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
transcription factor TFIIE subunit alpha
RifSed_csp2_16ft_3_scaffold_1440_22
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

18144..18671
DNA (528bp) protein (176aa)
Uncharacterized protein MJ0778 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=Y778_METJA
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_1440_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18658..18975)
DNA (318bp) protein (106aa)
Uncharacterized protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XLC7_METZD
Uncharacterized protein {ECO:0000313|EMBL:KCZ70650.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_1440_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19143..19460
DNA (318bp) protein (106aa)
Putative uncharacterized protein C3_0015 Tax=uncultured archaeon RepID=Q2Y4F6_9ARCH
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:KCZ70649.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
iron-sulfur cluster assembly accessory protein
RifSed_csp2_16ft_3_scaffold_1440_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19466..19819
DNA (354bp) protein (118aa)
Nascent polypeptide-associated complex protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E5V6_METEZ
Nascent polypeptide-associated complex protein {ECO:0000256|HAMAP-Rule:MF_00814}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
alpha-NAC-like protein
RifSed_csp2_16ft_3_scaffold_1440_26
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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20060..20878
DNA (819bp) protein (273aa)
Pyrroline-5-carboxylate reductase Tax=Methanolobus psychrophilus R15 RepID=K4MDT0_9EURY
pyrroline-5-carboxylate reductase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_1440_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20875..21675
DNA (801bp) protein (267aa)
Methanogen marker protein 4 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E9T2_METMS
Putative methanogen marker protein 4 {ECO:0000313|EMBL:KCZ71713.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
methanogen marker protein 4
RifSed_csp2_16ft_3_scaffold_1440_28
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

21678..22472
DNA (795bp) protein (265aa)
Putative methyltransferase {ECO:0000313|EMBL:KCZ71712.1}; EC=2.1.1.228 {ECO:0000313|EMBL:KCZ71712.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1AE0E related cluster Tax=unknown RepID=UPI0003D1AE0E
SAM-dependent methyltransferase
RifSed_csp2_16ft_3_scaffold_1440_29
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

22565..23836
DNA (1272bp) protein (424aa)
L-threonine synthase (EC:4.2.3.1)
Threonine synthase Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAN1_METMS
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_1440_30
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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23849..24124
DNA (276bp) protein (92aa)
MoaD family protein Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAN0_METMS
MoaD family protein
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying items 1-30 of 39 in total

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