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RifSed_csp1_16ft_3_scaffold_24046

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_16ft_3_scaffold_24046_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(66..362)
DNA (297bp) protein (99aa)
50S ribosomal protein L37Ae Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12ZB5_METBU
50S ribosomal protein L37Ae {ECO:0000256|HAMAP-Rule:MF_00327}; Ribosomal protein L43e {ECO:0000256|HAMAP-Rule:MF_00327}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rpl37ae; 50S ribosomal protein L37Ae
RifSed_csp1_16ft_3_scaffold_24046_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(365..1150)
DNA (786bp) protein (262aa)
rrp42p; exosome complex RNA-binding protein Rrp42 (EC:3.1.13.-)
Exosome complex component Rrp42 Tax=Uncultured methanogenic archaeon RC-I RepID=RRP42_UNCMA
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_16ft_3_scaffold_24046_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(1137..1868)
DNA (732bp) protein (244aa)
rrp41p; putative exosome complex exonuclease 1 (EC:3.1.13.-)
Exosome complex component Rrp41 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W2Y8_UNCMA
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_16ft_3_scaffold_24046_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1865..2656)
DNA (792bp) protein (264aa)
Exosome complex component Rrp4 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B8W4_METTP
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
exosome complex RNA-binding protein Rrp4
RifSed_csp1_16ft_3_scaffold_24046_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2663..3358)
DNA (696bp) protein (232aa)
Shwachman-Bodian-Diamond syndrome protein Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B8W5_METTP
rRNA metabolism protein, SBDS family {ECO:0000313|EMBL:KCZ70726.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative RNA-associated protein
RifSed_csp1_16ft_3_scaffold_24046_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3365..4138)
DNA (774bp) protein (258aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PsmA {ECO:0000256|HAMAP-Rule:MF_00289}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Proteasome subunit alpha, archaeal (EC:3.4.25.1)
Proteasome subunit alpha Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=PSA_METBF
RifSed_csp1_16ft_3_scaffold_24046_7
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(4181..4477)
DNA (297bp) protein (99aa)
Ribonuclease P protein component 2 Tax=uncultured archaeon RepID=D1JE00_9ARCH
ribonuclease P
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 7 items

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