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SR-VP_26_10_2019_C_40cm_scaffold_323

Search features with annotation key words

Displaying items 1-30 of 101 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_C_40cm_scaffold_323_1
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1..105
DNA (105bp) protein (35aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_C_40cm_scaffold_323_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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106..873
DNA (768bp) protein (256aa)
CRISPR-associated protein Cas6 containing DUF57 domain n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WX9_METBU
CRISPR-associated endoribonuclease {ECO:0000256|PIRNR:PIRNR005054}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
CRISPR-associated Cas6 family protein
SR-VP_26_10_2019_C_40cm_scaffold_323_3
unknown

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1002..1442
DNA (441bp) protein (147aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_323_4
Thermoanaerobacter kivui, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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1442..2833
DNA (1392bp) protein (464aa)
CRISPR-associated protein, Cst1 family n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46FQ2_METBF
CRISPR-associated protein CXXC_CXXC region
CRISPR-associated protein CXXC_CXXC region {ECO:0000313|EMBL:AIS53554.1}; TaxID=2325 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter kivui (Acetogenium kivui).;"
SR-VP_26_10_2019_C_40cm_scaffold_323_5
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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2830..3873
DNA (1044bp) protein (348aa)
CRISPR-associated autoregulator, DevR family n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D797_METSW
DevR family CRISPR-associated autoregulator
CRISPR-associated autoregulator, DevR family {ECO:0000313|EMBL:AEG18431.1}; TaxID=868131 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium paludis (strain DSM 25820 / JCM 18151 / SWAN1).;"
SR-VP_26_10_2019_C_40cm_scaffold_323_6
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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3875..4528
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) RepID=A5UJJ4_METS3
putative DNA repair protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ86372.1}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
SR-VP_26_10_2019_C_40cm_scaffold_323_7
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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4500..6680
DNA (2181bp) protein (727aa)
Predicted helicase n=1 Tax=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) RepID=A5UJJ3_METS3
helicase
Predicted helicase {ECO:0000313|EMBL:ABQ86371.1}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
Cas3 Jill Banfield (11/3/22)
SR-VP_26_10_2019_C_40cm_scaffold_323_8
Geoglobus acetivorans, Geoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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7467..7697
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PJC6_9ZZZZ id=5103633 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY89553.1}; TaxID=565033 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Geoglobus.;" source="Geoglobus acetivorans.;"
SR-VP_26_10_2019_C_40cm_scaffold_323_9
unknown

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7698..8120
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003771515
Protein containing Nucleotide binding protein, PINc domain {ECO:0000313|EMBL:EFK96340.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
Protein containing Nucleotide binding protein, PINc protein
SR-VP_26_10_2019_C_40cm_scaffold_323_10
CG_Elusi_02, Elusimicrobia, Bacteria

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8344..8943
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ87_NITGG id=5103445 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Tax=CG_Elusi_02
SR-VP_26_10_2019_C_40cm_scaffold_323_11
unknown

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8937..9032
DNA (96bp) protein (32aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_323_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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9029..9595
DNA (567bp) protein (189aa)
CRISPR-associated protein Cas4 containing DUF83 domain n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WX4_METBU
CRISPR-associated exonuclease, Cas4 family {ECO:0000313|EMBL:KCZ73496.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
CRISPR-associated Cas4 family protein
SR-VP_26_10_2019_C_40cm_scaffold_323_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9592..10581
DNA (990bp) protein (330aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WX3_METBU
CRISPR-associated Cas1 family protein
SR-VP_26_10_2019_C_40cm_scaffold_323_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10584..10847
DNA (264bp) protein (88aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WX2_METBU
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_323_15
unknown

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12428..12667
DNA (240bp) protein (80aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_323_trna_2
unknown

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comp(13241..13312)
DNA (72bp)
transferRNA Gly
SR-VP_26_10_2019_C_40cm_scaffold_323_16
unknown

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comp(13458..13736)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YWE0_METPS
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_323_17
unknown

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comp(13733..14434)
DNA (702bp) protein (234aa)
Phage shock protein A (IM30), suppresses sigma54-dependent transcription n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KTG4_METHD
phage shock protein A (IM30), suppresses sigma54-dependent transcription
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_323_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14527..16233
DNA (1707bp) protein (569aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XKM5_METZD
Putative ATPase {ECO:0000313|EMBL:KCZ73521.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_323_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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16230..17495
DNA (1266bp) protein (422aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Phosphomethylpyrimidine synthase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12Y08_METBU
thiamine biosynthesis protein ThiC
SR-VP_26_10_2019_C_40cm_scaffold_323_20
unknown

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comp(17558..17827)
DNA (270bp) protein (90aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_323_21
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

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comp(18414..18899)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7U3S2_9EURY
hypothetical protein
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
SR-VP_26_10_2019_C_40cm_scaffold_323_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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18990..21209
DNA (2220bp) protein (740aa)
ATP-dependent DNA helicase Hel308 {ECO:0000256|HAMAP-Rule:MF_00442}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00442};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1BDA8 related cluster n=1 Tax=unknown RepID=UPI0003D1BDA8
DEAD/DEAH box helicase domain-containing protein
SR-VP_26_10_2019_C_40cm_scaffold_323_23
unknown

Not on your lists

21228..22202
DNA (975bp) protein (325aa)
UPI0003D1A9BE related cluster n=1 Tax=unknown RepID=UPI0003D1A9BE
undecaprenyl diphosphate synthase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_323_24
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(22211..22633)
DNA (423bp) protein (141aa)
Putative nickel-responsive regulator n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I9U7_METCZ
CopG family transcriptional regulator
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_C_40cm_scaffold_323_25
unknown

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23026..23535
DNA (510bp) protein (170aa)
Flavodoxin n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TPV5_METAC
Flavodoxin
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_323_26
unknown

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comp(23658..24293)
DNA (636bp) protein (212aa)
UPI0003D1BF0D related cluster n=1 Tax=unknown RepID=UPI0003D1BF0D
Marine sediment metagenome DNA, contig: S12H4_S08185 {ECO:0000313|EMBL:GAJ00751.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_323_27
unknown

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24701..25207
DNA (507bp) protein (169aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_323_28
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(25341..25667)
DNA (327bp) protein (109aa)
Conserved protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8Q0E7_METMA
Uncharacterized protein {ECO:0000313|EMBL:KKG66613.1}; TaxID=2209 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei (Methanosarcina frisia).;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_323_29
unknown

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comp(25986..26219)
DNA (234bp) protein (78aa)
Marine sediment metagenome DNA, contig: S12H4_S15383 {ECO:0000313|EMBL:GAJ13100.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
YcfA family protein id=5007993 bin=GWA2_Elusimicrobia_69_24 species=Methanomethylovorans hollandica genus=Methanomethylovorans taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
putative periplasmic or secreted lipoprotein
Displaying items 1-30 of 101 in total

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