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SR-VP_0-2_scaffold_141_4189386

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Displaying 12 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_0-2_scaffold_141_4189386_1
Aeropyrum camini, Aeropyrum, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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2..373
DNA (372bp) protein (124aa)
Predicted nucleic acid-binding protein n=1 Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3TDF1_9CREN
predicted nucleic acid-binding protein
Predicted nucleic acid-binding protein {ECO:0000313|EMBL:BAN90050.1}; TaxID=1198449 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum.;" source="Aeropyrum camini SY1 = JCM 12091.;"
SR-VP_0-2_scaffold_141_4189386_2
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(807..1946)
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI0002FBCDEE
Pentapeptide repeat protein
Pentapeptide repeat protein {ECO:0000313|EMBL:AET63730.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta harundinacea (strain 6Ac).;"
SR-VP_0-2_scaffold_141_4189386_3
unknown

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comp(2047..2649)
DNA (603bp) protein (201aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_4189386_4
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3032..3889)
DNA (858bp) protein (286aa)
pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit (EC:1.2.7.3); K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] id=31772 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
pyruvate-ferredoxin oxidoreductase and related 2-oxoacid-ferredoxin oxidoreductases subunit beta
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_0-2_scaffold_141_4189386_5
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3882..5630)
DNA (1749bp) protein (583aa)
pyruvate flavodoxin/ferredoxin oxidoreductase-like protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] id=5050423 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
pyruvate flavodoxin/ferredoxin oxidoreductase-like protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_0-2_scaffold_141_4189386_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5768..6193)
DNA (426bp) protein (142aa)
UPF0292 protein Mzhil_1807 n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQP3_METZD
UPF0292 protein ANME2D_00528 {ECO:0000256|HAMAP-Rule:MF_01095}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Small primase-like proteins (Toprim domain)
SR-VP_0-2_scaffold_141_4189386_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6186..6488)
DNA (303bp) protein (101aa)
UPF0235 protein Metho_2201 n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L268_METHD
UPF0235 protein ANME2D_00529 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
TIGR00251 family protein
SR-VP_0-2_scaffold_141_4189386_8
Methanosarcina vacuolata, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6522..7742)
DNA (1221bp) protein (407aa)
Hypothetical membrane protein n=1 Tax=uncultured archaeon RepID=D1JHX9_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB45077.1}; TaxID=1434123 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina vacuolata Z-761.;"
SR-VP_0-2_scaffold_141_4189386_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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8124..8945
DNA (822bp) protein (274aa)
Chorismate dehydratase {ECO:0000256|HAMAP-Rule:MF_00995}; EC=4.2.1.151 {ECO:0000256|HAMAP-Rule:MF_00995};; Menaquinone biosynthetic enzyme MqnA {ECO:0000256|HAMAP-Rule:MF_00995}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Uncharacterized protein n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0SYL5_SYNGF
hypothetical protein
SR-VP_0-2_scaffold_141_4189386_10
unknown

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9098..9265
DNA (168bp) protein (56aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_4189386_trna_1
unknown

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9140..9240
DNA (101bp)
transferRNA Lys
SR-VP_0-2_scaffold_141_4189386_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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9262..9519
DNA (258bp) protein (86aa)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1B5D2 related cluster n=1 Tax=unknown RepID=UPI0003D1B5D2
DNA-directed RNA polymerase, subunit H, RpoH/RPB5
Displaying 12 items

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