ggKbase home page

SR-VP_26_10_2020_1_100CM_scaffold_1110318

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2020_1_100CM_scaffold_1110318_1
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1..1143)
DNA (1143bp) protein (381aa)
cytochrome c biogenesis protein transmembrane region
UPI0003D1A8B5 related cluster n=1 Tax=unknown RepID=UPI0003D1A8B5
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2020_1_100CM_scaffold_1110318_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(1220..2572)
DNA (1353bp) protein (451aa)
tRNA CCA-pyrophosphorylase
CCA-adding enzyme n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MBE6_9EURY
CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01264}; EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01264};; CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA CCA-pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA adenylyl-/cytidylyl- transferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA-NT {ECO:0000256|HAMAP-Rule:MF_01264}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_1110318_3
unknown

Not on your lists

2743..3222
DNA (480bp) protein (160aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) RepID=C9RG33_METVM
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_1110318_4
unknown

Not on your lists

comp(3247..4614)
DNA (1368bp) protein (456aa)
conserved protein of unknown function; RTX toxins and related Ca2+-binding domain
Putative uncharacterized protein n=1 Tax=Dictyostelium fasciculatum (strain SH3) RepID=F4PTN3_DICFS
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_1110318_5
unknown

Not on your lists

4848..6932
DNA (2085bp) protein (695aa)
MCM family protein
Replicative DNA helicase Mcm n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B5T2_METTP
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_1110318_6
unknown

Not on your lists

6898..7224
DNA (327bp) protein (109aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8A2_METEZ
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_1110318_7
unknown

Not on your lists

7221..7874
DNA (654bp) protein (218aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAF0_METMS
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_1110318_8
unknown

Not on your lists

7831..8940
DNA (1110bp) protein (370aa)
phosphoserine phosphatase
Coiled-coil domain protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12TE6_METBU
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_1110318_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8930..9787)
DNA (858bp) protein (286aa)
radical SAM protein
Radical SAM domain protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E7X6_METMS
B12-binding domain/radical SAM domain protein, MJ_1487 family {ECO:0000313|EMBL:KCZ71469.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_1110318_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9791..10036)
DNA (246bp) protein (82aa)
hypothetical protein
B12-binding domain/radical SAM domain containing protein n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1QJ13_METMZ
B12-binding domain/radical SAM domain protein, MJ_1487 family {ECO:0000313|EMBL:KCZ71469.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_1110318_11
unknown

Not on your lists

comp(10105..10854)
DNA (750bp) protein (250aa)
phosphoglycerol geranylgeranyltransferase
Geranylgeranylglyceryl phosphate synthase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KT38_METHD
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_1110318_12
unknown

Not on your lists

comp(10859..11008)
DNA (150bp) protein (50aa)
rpl40e; 50S ribosomal protein L40
50S ribosomal protein L40e n=2 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=RL40_METAC
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_1110318_13
unknown

Not on your lists

11758..11883
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying 13 items

View Taxonomy